Non-Coding RNA Search

Ss1.1-Pig2-66L07.5

Sequence:


               
               TTTTTTTTTTTTTTTTCACGATATTTATAATTATTTAATGAATGTTCCAAACACACCCTT
CACGGGGGCTATAGGTGAATTTCATGATGATGGAAGCTGAGGTGCCTCCCGCCCGAACAA
CCACATGATTACCTGCAGCTTCCAAAAACCCGGATACCAACCAGAAACGCTCCATAGGGA
ACGGCATGATCACTGAGCCAGAGGTTCTTTGGGATTCTTACCCTCTCTTCCTCCTCCCCA
TAAGGACCTTCTCCAGGGGTAGGATGCTCAGGACGGGAGAAGGGGGTGGGGAGGCCCCAT
CATACCTGTGCAAAGAGGTGCGCTGGGAACCCCACACCTCCAATGCAGTAAGATGACCCA
GAGGCACAGGGCTGCTCAATAAATAAATAATTCCCAGAAGCCACCCCCAGGGACTGGTGG
GCCCAGGGATGCCGAGCTGGAGGAACCACCCTGCTGACACCTGGCCAGGCCCACTCGCTA
CGTGTTGCACACAAGCACGTCTGCAAAGGGTCCCAGGAGGGTTTTGTTGAAGATGCAACG
GACCCACACCAGGTAAGTGGTGAAGGGCTTGATGTTCTCAGTGAAGGTGTGGTTCTGCAG
GGTCAGGATGTAAGGCACGTAGGTGTTCTCTCCCTGCTCCTGGAGCCACACTTCATACTT
CACCTCCCTCACCTTCAGGTACTTGAGGTTCCACGGGATCTGCCAGGAGACGGTGAGGCG
GGCCTCGGAGGCGCCCTGCACCGACGACTGGCACCGCGCCTCCCGCACCTTGCCGGGGTA
CAGGCTGACCGTCCACTTCTGCTTCCGCGGCCCCGGCCGGCCCTTCACTACGCGCCGTAT
GGTTTGGATGAGGGACGGGATGTCCACTTTGGTGTCCTGGTAGATTCGGAAGAGCCACTC
GGGGTTCCGGCAGCAAAGGTGCCGCGGGACCTCCTGGCTTTGCAGGATGCGAGCCTGCTC
TGCACGGTCTAGGTGGGCGATGCCCCCCTGGTCCCAGGGCCGTTCCGGGTGCGTGACTGT
GTTCTCGGGCATCGTGTTCCGCCAGGCTATGTACTGGAGGTCCATGCCAGGCAGCGTAGC
CAGCGTCTTATAGGGGGTGTAGTGGTCAGGGTTGACGGCGTAAGGAAAAAGTTCCACCAC
GGCGGCCCCTCGGGGCAGAAAAAGGGCAGTGACCAGCTGGGCCCCGTGCATGCTGACCAG
CATGGAGGCGTTGCTGACCAGTCTCACGACATCTGCAAAGGCATGGTCCTCCAGGGACAC
TGTCACCGTCTTCATCTGGAACTCCTGCGCCAGGGCCAGCAGCAGCTCTGCCTCATTCAG
GATGAGTCTGTTCTGGGTGCGGCTGAAGACCAGGATGTACTCCTCGCCCAGGGCGCCCCC
TGCGTGGCTCACATTCAGCTTTTCCGTCAGGAACCGTGCAAATTGCCGGATCTCGTTGCC
TGAGACAAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTCACGATATTTATAATTATTTAATGAATGTTCCAAACACACCCTT
CACGGGGGCTATAGGTGAATTTCATGATGATGGAAGCTGAGGTGCCTCCCGCCCGAACAA
CCACATGATTACCTGCAGCTTCCAAAAACCCGGATACCAACCAGAAACGCTCCATAGGGA
ACGGCATGATCACTGAGCCAGAGGTTCTTTGGGATTCTTACCCTCTCTTCCTCCTCCCCA
TAAGGACCTTCTCCAGGGGTAGGATGCTCAGGACGGGAGAAGGGGGTGGGGAGGCCCCAT
CATACCTGTGCAAAGAGGTGCGCTGGGAACCCCACACCTCCAATGCAGTAAGATGACCCA
GAGGCACAGGGCTGCTCAATAAATAAATAATTCCCAGAAGCCACCCCCAGGGACTGGTGG
GCCCAGGGATGCCGAGCTGGAGGAACCACCCTGCTGACACCTGGCCAGGCCCACTCGCTA
CGTGTTGCACACAAGCACGTCTGCAAAGGGTCCCAGGAGGGTTTTGTTGAAGATGCAACG
GACCCACACCAGGTAAGTGGTGAAGGGCTTGATGTTCTCAGTGAAGGTGTGGTTCTGCAG
GGTCAGGATGTAAGGCACGTAGGTGTTCTCTCCCTGCTCCTGGAGCCACACTTCATACTT
CACCTCCCTCACCTTCAGGTACTTGAGGTTCCACGGGATCTGCCAGGAGACGGTGAGGCG
GGCCTCGGAGGCGCCCTGCACCGACGACTGGCACCGCGCCTCCCGCACCTTGCCGGGGTA
CAGGCTGACCGTCCACTTCTGCTTCCGCGGCCCCGGCCGGCCCTTCACTACGCGCCGTAT
GGTTTGGATGAGGGACGGGATGTCCACTTTGGTGTCCTGGTAGATTCGGAAGAGCCACTC
GGGGTTCCGGCAGCAAAGGTGCCGCGGGACCTCCTGGCTTTGCAGGATGCGAGCCTGCTC
TGCACGGTCTAGGTGGGCGATGCCCCCCTGGTCCCAGGGCCGTTCCGGGTGCGTGACTGT
GTTCTCGGGCATCGTGTTCCGCCAGGCTATGTACTGGAGGTCCATGCCAGGCAGCGTAGC
CAGCGTCTTATAGGGGGTGTAGTGGTCAGGGTTGACGGCGTAAGGAAAAAGTTCCACCAC
GGCGGCCCCTCGGGGCAGAAAAAGGGCAGTGACCAGCTGGGCCCCGTGCATGCTGACCAG
CATGGAGGCGTTGCTGACCAGTCTCACGACATCTGCAAAGGCATGGTCCTCCAGGGACAC
TGTCACCGTCTTCATCTGGAACTCCTGCGCCAGGGCCAGCAGCAGCTCTGCCTCATTCAG
GATGAGTCTGTTCTGGGTGCGGCTGAAGACCAGGATGTACTCCTCGCCCAGGGCGCCCCC
TGCGTGGCTCACATTCAGCTTTTCCGTCAGGAACCGTGCAAATTGCCGGATCTCGTTGCC
TGAGACAAGGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14042173|dbj|BAB55137.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14042173|dbj|BAB55137.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               209-397, - strand, RNAz p=0.999074
               

               
               554-673, + strand, RNAz p=0.936999

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-397, - strand, RNAz p=0.999074
               

               
               554-673, + strand, RNAz p=0.936999

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032806, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032806, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               17-1452, gnl|bosTau2|chr22 (13968694-13970134)
               

               
               17-1452, gnl|Hg17|chr3 (43095725-43097159)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1452, gnl|bosTau2|chr22 (13968694-13970134)
               

               
               17-1452, gnl|Hg17|chr3 (43095725-43097159)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               csp (0.161186)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	209-397, - strand, RNAz p=0.999074
	554-673, + strand, RNAz p=0.936999

	17-1452, gnl\|bosTau2\|chr22 (13968694-13970134)
	17-1452, gnl\|Hg17\|chr3 (43095725-43097159)

	csp (0.161186)
	nca (0.136874)
	nmm (0.132802)
	cov (0.132153)
	ecc (0.115035)
	jca (0.11396)