Non-Coding RNA Search

Ss1.1-Pig2-66M08.5

Sequence:


               
               AGACAGTGAAAATATGAAATCACTATTGCTGCTGCCAGAGAAAGATGAATCATCATCAAC
CAGCCATTGCTCAGCAGTAAACACTGGTCAGCGCAGGGATGGACCTCTTGTACTTATAGG
CAGTGGGCTCTCTTCAGAACAACAGAAAATGCTCAGTGAGCTTGCAGCAATGCTTAAGGC
TAAAAAGTGTGCTGAGTTTGACAGTGCAGTAACGCATGTCGTTGTTCCTGGTGATACAGT
TCAAAGCACCCTGAAATGTATGCTTGGGATTCTCAGTGGATGCTGGATTCTAAAATTTGA
GTGGGTGAAAGCTTGTCTACAAAGAAAAAAATGTGAACAGGAAGAAAAGTATGAAATTCC
TGAAGGGCCAAGGAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGG
ATGCTACTTCTATTTTGGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCT
TGTCACTGCAGCTGGGGGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGATGTGAC
TCAAACCATCAATACAGTCGCATACCATGCCAAACCTGATTCTGATCAGCGCTTCTGCAC
GCAGTATATCATCTATGAGGATTTGTCTAATCATCGCCCAGAGAGAGTTCGGCAGGGCAA
AGTCTGGATGGCTCCTTCCAGCTGGTTTATAGATTGTGTGATGTCCTTTGAGCTGCTCCC
TCTTGACAGCTGAATGCTACACCAGATGAACATTTTAAACTGAACCCACAGAGTGTGAGA
ACCCAGTGATTGCATTGTTTTGATCACTCACATTTTTACAAATAGGTAGACTCATTCATG
TACTCTTTTCCCTTGAATTAAAAAAACAAAAACAAAAACTGTATGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACAGTGAAAATATGAAATCACTATTGCTGCTGCCAGAGAAAGATGAATCATCATCAAC
CAGCCATTGCTCAGCAGTAAACACTGGTCAGCGCAGGGATGGACCTCTTGTACTTATAGG
CAGTGGGCTCTCTTCAGAACAACAGAAAATGCTCAGTGAGCTTGCAGCAATGCTTAAGGC
TAAAAAGTGTGCTGAGTTTGACAGTGCAGTAACGCATGTCGTTGTTCCTGGTGATACAGT
TCAAAGCACCCTGAAATGTATGCTTGGGATTCTCAGTGGATGCTGGATTCTAAAATTTGA
GTGGGTGAAAGCTTGTCTACAAAGAAAAAAATGTGAACAGGAAGAAAAGTATGAAATTCC
TGAAGGGCCAAGGAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGG
ATGCTACTTCTATTTTGGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCT
TGTCACTGCAGCTGGGGGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGATGTGAC
TCAAACCATCAATACAGTCGCATACCATGCCAAACCTGATTCTGATCAGCGCTTCTGCAC
GCAGTATATCATCTATGAGGATTTGTCTAATCATCGCCCAGAGAGAGTTCGGCAGGGCAA
AGTCTGGATGGCTCCTTCCAGCTGGTTTATAGATTGTGTGATGTCCTTTGAGCTGCTCCC
TCTTGACAGCTGAATGCTACACCAGATGAACATTTTAAACTGAACCCACAGAGTGTGAGA
ACCCAGTGATTGCATTGTTTTGATCACTCACATTTTTACAAATAGGTAGACTCATTCATG
TACTCTTTTCCCTTGAATTAAAAAAACAAAAACAAAAACTGTATGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55619687|ref|XP_526107.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55619687|ref|XP_526107.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-476, + strand, RNAz p=0.960218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-476, + strand, RNAz p=0.960218

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               158-734, gnl|bosTau2|chr11 (25549838-25550414)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-734, gnl|bosTau2|chr11 (25549838-25550414)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)