Non-Coding RNA Search

Ss1.1-Pig2-66N20.5

Sequence:


               
               ATGAGTAGGCTCAGGGCCAGCGCCCTGTCTCAAAGATGCCAAAATGAGGCTAGTTCTAGA
TGAGCTAGCTGGGGGGTGCTCAGCCTGAAGAACATTGTGCTGCTCAGATCCTATGCACTG
AGCCCGTGGACATTCACAGGCCTAGGCCCTGGAGGCTGGCAGGACAGGAGCCATGCCCCG
AAGTTTCTGGGAGAGGCTCTTGCAAAAGGCTTGTGCTTTAAAGCCTCTTTCAGGGCTTCA
GGCTTCTGCTCTGTGCCCACTCACTCTGGTTAAGGGGGTGAGTAAAAGGGCTTGGCAAGG
ATTGTGGACACAGGGTAGGCCCTGGCACCATGGGTTTCAGGCTACTTTCACTTTCTTATA
GGAGCATAGCCAGGAGCAGATGAGGCAGGGCAGAGGGCTGGTCCCTCCTTTCCTCCCATC
CTCCTTCAAATGCTGAATTGTCTCTAGCAGTGGAAGGTCAGCGACTGTGAATCCCGTGCT
GTATATCCTTCCTGAGCCTCTGCTTACTCTCAGGGCCAAGAAGCTCCCCACATGGGGCCC
TCTCTTTATAGAAGCAGGGCTGTAAACTGAGGAGCAGTGCAAGATTACAGGCATTTTGGT
AAGCAGTCGTTAACCCAGCCCTGGCTTCCGGTTAATGCAGGTAGGTCCCCTGATTGGGTG
CAGTGAAAAAGAGCTAGAAGAACCCTGGCCCAGAAGACTCTGCTTGCTCCAGTAAGTCAC
AGTGGCCCTGGGGTGCTGGCCTTGTGTTGAGGAGCCACAGGGAATTGTTAGTGGCCAAGG
CTTTCCCTCTTTTCTCTCCAGGCAGCATTGGAGCCTCTCCCCACCCCGGCCTGGGCCTTC
CCCAGTGGTGTTAGAGAAAAGCATGTTCCTCTGTTGTCAGCTCTTTTCAGGGGCATCCTG
CCCACGATGCTCAGTCCTCAGTCAGGTGGCTGAGACCATCACTCATGCAGCTTCTGGGGA
ACCAAAAACCAGCACTAAAATAAAGCTGAGTGACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAGTAGGCTCAGGGCCAGCGCCCTGTCTCAAAGATGCCAAAATGAGGCTAGTTCTAGA
TGAGCTAGCTGGGGGGTGCTCAGCCTGAAGAACATTGTGCTGCTCAGATCCTATGCACTG
AGCCCGTGGACATTCACAGGCCTAGGCCCTGGAGGCTGGCAGGACAGGAGCCATGCCCCG
AAGTTTCTGGGAGAGGCTCTTGCAAAAGGCTTGTGCTTTAAAGCCTCTTTCAGGGCTTCA
GGCTTCTGCTCTGTGCCCACTCACTCTGGTTAAGGGGGTGAGTAAAAGGGCTTGGCAAGG
ATTGTGGACACAGGGTAGGCCCTGGCACCATGGGTTTCAGGCTACTTTCACTTTCTTATA
GGAGCATAGCCAGGAGCAGATGAGGCAGGGCAGAGGGCTGGTCCCTCCTTTCCTCCCATC
CTCCTTCAAATGCTGAATTGTCTCTAGCAGTGGAAGGTCAGCGACTGTGAATCCCGTGCT
GTATATCCTTCCTGAGCCTCTGCTTACTCTCAGGGCCAAGAAGCTCCCCACATGGGGCCC
TCTCTTTATAGAAGCAGGGCTGTAAACTGAGGAGCAGTGCAAGATTACAGGCATTTTGGT
AAGCAGTCGTTAACCCAGCCCTGGCTTCCGGTTAATGCAGGTAGGTCCCCTGATTGGGTG
CAGTGAAAAAGAGCTAGAAGAACCCTGGCCCAGAAGACTCTGCTTGCTCCAGTAAGTCAC
AGTGGCCCTGGGGTGCTGGCCTTGTGTTGAGGAGCCACAGGGAATTGTTAGTGGCCAAGG
CTTTCCCTCTTTTCTCTCCAGGCAGCATTGGAGCCTCTCCCCACCCCGGCCTGGGCCTTC
CCCAGTGGTGTTAGAGAAAAGCATGTTCCTCTGTTGTCAGCTCTTTTCAGGGGCATCCTG
CCCACGATGCTCAGTCCTCAGTCAGGTGGCTGAGACCATCACTCATGCAGCTTCTGGGGA
ACCAAAAACCAGCACTAAAATAAAGCTGAGTGACCG

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-117, + strand, RNAz p=0.974672
               

               
               172-423, - strand, RNAz p=0.997579
               

               
               501-620, - strand, RNAz p=0.756939
               

               
               779-890, - strand, RNAz p=0.985534

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.974672
               

               
               172-423, - strand, RNAz p=0.997579
               

               
               501-620, - strand, RNAz p=0.756939
               

               
               779-890, - strand, RNAz p=0.985534

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               507-635, + strand, RNAmicro p=0.995879

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               507-635, + strand, RNAmicro p=0.995879

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_025083, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025083, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-142, gnl|bosTau2|chr21 (22819976-22819835)
               

               
               1-142, gnl|Hg17|chr15 (72710920-72710760)
               

               
               1-142, gnl|Mm7|chr9 (57777078-57777251)
               


               
               172-989, gnl|bosTau2|chr21 (22819840-22819027)
               

               
               172-989, gnl|Hg17|chr15 (72710776-72709963)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chr21 (22819976-22819835)
               

               
               1-142, gnl|Hg17|chr15 (72710920-72710760)
               

               
               1-142, gnl|Mm7|chr9 (57777078-57777251)
               


               
               172-989, gnl|bosTau2|chr21 (22819840-22819027)
               

               
               172-989, gnl|Hg17|chr15 (72710776-72709963)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.350693)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               nca (0.136874)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               nca (0.136874)
               

               
               nbm (0.0993246)

	1-117, + strand, RNAz p=0.974672
	172-423, - strand, RNAz p=0.997579
	501-620, - strand, RNAz p=0.756939
	779-890, - strand, RNAz p=0.985534

	1-142, gnl\|bosTau2\|chr21 (22819976-22819835)
	1-142, gnl\|Hg17\|chr15 (72710920-72710760)
	1-142, gnl\|Mm7\|chr9 (57777078-57777251)

	172-989, gnl\|bosTau2\|chr21 (22819840-22819027)
	172-989, gnl\|Hg17\|chr15 (72710776-72709963)

	fbs (0.350693)
	nep (0.183925)
	ill (0.175593)
	nca (0.136874)
	nbm (0.0993246)