Ss1.1-Pig2-66O05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGAGCCCAGAAGTCGTCAGCTTGGCAGTTGCCTGGCCTCTGGATGTCTCCCAGGTGAG CAGATCCTAGCATGGGCCCCAGGGGTGAGGAAGGGGCTGGAACCTGAATTGCCAGGAACC CTGATTTGCAGCAACTTGAGGGTCACCTTCCAGCCCTGTGGATGGCAGCGGAGTCAGGAG ACTCCCCTGAGCAGTGAGTATGATTTTTCCCTGGCCAACATTGGACGATTAGAGGCTGTG AATGGCCTGTCCCGAGTCCAGCTCCTCCGTCCAGGGTCCCTGCTTAAATTTGTCCCTGAG GAGATTCTGATTCATGGCCGAGACTTCCGGCTCCTCAGAATTGGTTTTGAGGCTGGAGGA CTAGAGCCTCAGGCCTTTCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAGT CAAGGCCAAAAGTATGCAGGGCTAACCCTGAGCAAGGCTGGCCAGAGTGCTGGCTCTAGA AAACCACCTATTCCCCTCTTGGAGATATCAGAAGACTGGGAGACTGAGAGGAGAAAGCAG AGGGCCAGAGGCTGGAGGGTCAGCACTGTCAATGAGAGGTTCGACATAGCCACCAGCCTC CCCCGTTACTTCTCAGTGTAGGGGGAAGGGTAGAGTGGAGCTAGGTGTTTCTCCCTCAGT GATCCTTCTCTCGGCCGTGGACCGCGCCTGACCTGGCATCACCCTGGAGGCAGTGATCTT CTCCGCTGCGGTGGCTTCTATACAGCCAGTGACCCTAACAAGGAGGATATCAGGGCAGTG GAAACGATGCTCCAGGCCGGGCATTCAGACGTTGTCCTTGTAGACACTCTGGATGAGCTG CCTAGTCTTGCAGATGTCCAACTTGCCCATCTGAGGCTGAGAGCCCTCTGTCTGCCTGAT TCATCTGTAGCTGAGGATAAATGGCTTTCAGCTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGAGCCCAGAAGTCGTCAGCTTGGCAGTTGCCTGGCCTCTGGATGTCTCCCAGGTGAG CAGATCCTAGCATGGGCCCCAGGGGTGAGGAAGGGGCTGGAACCTGAATTGCCAGGAACC CTGATTTGCAGCAACTTGAGGGTCACCTTCCAGCCCTGTGGATGGCAGCGGAGTCAGGAG ACTCCCCTGAGCAGTGAGTATGATTTTTCCCTGGCCAACATTGGACGATTAGAGGCTGTG AATGGCCTGTCCCGAGTCCAGCTCCTCCGTCCAGGGTCCCTGCTTAAATTTGTCCCTGAG GAGATTCTGATTCATGGCCGAGACTTCCGGCTCCTCAGAATTGGTTTTGAGGCTGGAGGA CTAGAGCCTCAGGCCTTTCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAGT CAAGGCCAAAAGTATGCAGGGCTAACCCTGAGCAAGGCTGGCCAGAGTGCTGGCTCTAGA AAACCACCTATTCCCCTCTTGGAGATATCAGAAGACTGGGAGACTGAGAGGAGAAAGCAG AGGGCCAGAGGCTGGAGGGTCAGCACTGTCAATGAGAGGTTCGACATAGCCACCAGCCTC CCCCGTTACTTCTCAGTGTAGGGGGAAGGGTAGAGTGGAGCTAGGTGTTTCTCCCTCAGT GATCCTTCTCTCGGCCGTGGACCGCGCCTGACCTGGCATCACCCTGGAGGCAGTGATCTT CTCCGCTGCGGTGGCTTCTATACAGCCAGTGACCCTAACAAGGAGGATATCAGGGCAGTG GAAACGATGCTCCAGGCCGGGCATTCAGACGTTGTCCTTGTAGACACTCTGGATGAGCTG CCTAGTCTTGCAGATGTCCAACTTGCCCATCTGAGGCTGAGAGCCCTCTGTCTGCCTGAT TCATCTGTAGCTGAGGATAAATGGCTTTCAGCTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 265-381, + strand, RNAz p=0.521318 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 265-381, + strand, RNAz p=0.521318 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 53-181, gnl|bosTau2|chr3 (17540828-17540956) | |
| 53-181, gnl|canFam2|chr17 (62301248-62301417) | |
| 53-181, gnl|danRer3|chr16 (47960805-47960646) | |
| 53-181, gnl|dasNov1|scaffold_4568 (62534-62700) | |
| 53-181, gnl|echTel1|scaffold_294012 (63641-63489) | |
| 53-181, gnl|hg17|chr1 (146720521-146720690) | |
| 53-181, gnl|Hg17|chr1 (146720674-146720546) | |
| 53-181, gnl|loxAfr1|scaffold_12005 (7003-6830) | |
| 53-181, gnl|mm7|chr3 (96037188-96037025) | |
| 53-181, gnl|Mm7|chr3 (96037039-96037167) | |
| 53-181, gnl|monDom2|scaffold_44 (3067584-3067753) | |
| 53-181, gnl|panTro1|chr1 (128436071-128436240) | |
| 53-181, gnl|rheMac2|chr1 (128288389-128288558) | |
| 53-181, gnl|rn3|chr2 (190931381-190931212) | |
| 238-381, gnl|bosTau2|chr3 (17541409-17541551) | |
| 238-381, gnl|Hg17|chr1 (146720095-146719951) | |
| 238-381, gnl|Mm7|chr3 (96037617-96037761) | |
| 460-596, gnl|bosTau2|chr3 (17542222-17542358) | |
| 460-596, gnl|Hg17|chr1 (146719293-146719157) | |
| 460-596, gnl|Mm7|chr3 (96038382-96038518) | |
| 613-782, gnl|bosTau2|chr3 (17542781-17542950) | |
| 613-782, gnl|Hg17|chr1 (146718736-146718568) | |
| 613-782, gnl|Mm7|chr3 (96038879-96039043) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-181, gnl|bosTau2|chr3 (17540828-17540956) | |
| 53-181, gnl|canFam2|chr17 (62301248-62301417) | |
| 53-181, gnl|danRer3|chr16 (47960805-47960646) | |
| 53-181, gnl|dasNov1|scaffold_4568 (62534-62700) | |
| 53-181, gnl|echTel1|scaffold_294012 (63641-63489) | |
| 53-181, gnl|hg17|chr1 (146720521-146720690) | |
| 53-181, gnl|Hg17|chr1 (146720674-146720546) | |
| 53-181, gnl|loxAfr1|scaffold_12005 (7003-6830) | |
| 53-181, gnl|mm7|chr3 (96037188-96037025) | |
| 53-181, gnl|Mm7|chr3 (96037039-96037167) | |
| 53-181, gnl|monDom2|scaffold_44 (3067584-3067753) | |
| 53-181, gnl|panTro1|chr1 (128436071-128436240) | |
| 53-181, gnl|rheMac2|chr1 (128288389-128288558) | |
| 53-181, gnl|rn3|chr2 (190931381-190931212) | |
| 238-381, gnl|bosTau2|chr3 (17541409-17541551) | |
| 238-381, gnl|Hg17|chr1 (146720095-146719951) | |
| 238-381, gnl|Mm7|chr3 (96037617-96037761) | |
| 460-596, gnl|bosTau2|chr3 (17542222-17542358) | |
| 460-596, gnl|Hg17|chr1 (146719293-146719157) | |
| 460-596, gnl|Mm7|chr3 (96038382-96038518) | |
| 613-782, gnl|bosTau2|chr3 (17542781-17542950) | |
| 613-782, gnl|Hg17|chr1 (146718736-146718568) | |
| 613-782, gnl|Mm7|chr3 (96038879-96039043) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) |