Non-Coding RNA Search

Ss1.1-Pig2-67K09.5

Sequence:


               
               TCAGATTTGAGCACCAGGCATTGCCCCTCTGGACTCCTTTCTCCTTTCCCACCCTCTCTT
GGCTGCTCCTGAGTCCTGTCTCCTGACTTCAGAGAAGGCGCTCCTGCCACCTTCCTAAGC
CTCCTGTAAGTCCTGTCAGATCTCAGCTTCCTTCAACAGTGTCTTCTCATCTAAATCCCT
CTGACTCTCCAACTTCTCTTTCATCTGACTGTGGTTCTCTTAAAGCCCAGGCAGCATTTT
GGTCCCTGCTCCTGCCCATAGTGAAACAGCCTGAAAAATCCCATGCAAGAGAGTAGTTTT
AAGTGGGCTACCTTGCCCTCTATTTAAAAGCATGCACAATCAAAGTACTATGCAATTTTA
AGACAATAAAGACTGTACAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGATTTGAGCACCAGGCATTGCCCCTCTGGACTCCTTTCTCCTTTCCCACCCTCTCTT
GGCTGCTCCTGAGTCCTGTCTCCTGACTTCAGAGAAGGCGCTCCTGCCACCTTCCTAAGC
CTCCTGTAAGTCCTGTCAGATCTCAGCTTCCTTCAACAGTGTCTTCTCATCTAAATCCCT
CTGACTCTCCAACTTCTCTTTCATCTGACTGTGGTTCTCTTAAAGCCCAGGCAGCATTTT
GGTCCCTGCTCCTGCCCATAGTGAAACAGCCTGAAAAATCCCATGCAAGAGAGTAGTTTT
AAGTGGGCTACCTTGCCCTCTATTTAAAAGCATGCACAATCAAAGTACTATGCAATTTTA
AGACAATAAAGACTGTACAATTTT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-382, gnl|bosTau2|chr7 (3711283-3710900)
               

               
               1-382, gnl|canFam2|chr11 (4420737-4420385)
               

               
               1-382, gnl|dasNov1|scaffold_20566 (4921-4594)
               

               
               1-382, gnl|galGal2|chr13_random (1050093-1049771)
               

               
               1-382, gnl|hg17|chr5 (179660255-179660591)
               

               
               1-382, gnl|Hg17|chr5 (179660696-179660305)
               

               
               1-382, gnl|loxAfr1|scaffold_127543 (5310-5648)
               

               
               1-382, gnl|mm7|chr11 (49795411-49795095)
               

               
               1-382, gnl|Mm7|chr11 (49794990-49795366)
               

               
               1-382, gnl|monDom2|scaffold_6 (15587219-15587497)
               

               
               1-382, gnl|oryCun1|scaffold_174137 (7242-7552)
               

               
               1-382, gnl|panTro1|chr4 (187207874-187208208)
               

               
               1-382, gnl|rheMac2|chr6 (176995362-176995697)
               

               
               1-382, gnl|rn3|chr10 (35337381-35337064)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-382, gnl|bosTau2|chr7 (3711283-3710900)
               

               
               1-382, gnl|canFam2|chr11 (4420737-4420385)
               

               
               1-382, gnl|dasNov1|scaffold_20566 (4921-4594)
               

               
               1-382, gnl|galGal2|chr13_random (1050093-1049771)
               

               
               1-382, gnl|hg17|chr5 (179660255-179660591)
               

               
               1-382, gnl|Hg17|chr5 (179660696-179660305)
               

               
               1-382, gnl|loxAfr1|scaffold_127543 (5310-5648)
               

               
               1-382, gnl|mm7|chr11 (49795411-49795095)
               

               
               1-382, gnl|Mm7|chr11 (49794990-49795366)
               

               
               1-382, gnl|monDom2|scaffold_6 (15587219-15587497)
               

               
               1-382, gnl|oryCun1|scaffold_174137 (7242-7552)
               

               
               1-382, gnl|panTro1|chr4 (187207874-187208208)
               

               
               1-382, gnl|rheMac2|chr6 (176995362-176995697)
               

               
               1-382, gnl|rn3|chr10 (35337381-35337064)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nms (0.213858)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               cly (0.120642)

	1-382, gnl\|bosTau2\|chr7 (3711283-3710900)
	1-382, gnl\|canFam2\|chr11 (4420737-4420385)
	1-382, gnl\|dasNov1\|scaffold_20566 (4921-4594)
	1-382, gnl\|galGal2\|chr13_random (1050093-1049771)
	1-382, gnl\|hg17\|chr5 (179660255-179660591)
	1-382, gnl\|Hg17\|chr5 (179660696-179660305)
	1-382, gnl\|loxAfr1\|scaffold_127543 (5310-5648)
	1-382, gnl\|mm7\|chr11 (49795411-49795095)
	1-382, gnl\|Mm7\|chr11 (49794990-49795366)
	1-382, gnl\|monDom2\|scaffold_6 (15587219-15587497)
	1-382, gnl\|oryCun1\|scaffold_174137 (7242-7552)
	1-382, gnl\|panTro1\|chr4 (187207874-187208208)
	1-382, gnl\|rheMac2\|chr6 (176995362-176995697)
	1-382, gnl\|rn3\|chr10 (35337381-35337064)