Ss1.1-Pig2-67K15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCAGTTGCTCCATCCCGTGGCCAGGTCGGAGGGAGGAGGCATCTTGTCTCTTGCCGTC CCTGCAGGCCAGTCCTGTTCTCCCTGCTCTCCCCACCCTGGGGAATAGGGAGGGTGGGAG AGGAGAGGGAGGGACCTGGAGGACTGGGAGCCTCAAGCCCGGAGAGGCTGCCCTGAGGCA CCGTGACCCTCAGACCAGGGCACTATCTGTGCGGCCGGTGCCCTCCTCCCAGGGCCCCCG GCCCTTAAGGCAGATGCTCCCCTCCACCCTGACCCCACTCACGCCCCGACACCACAGGTG CCCTGGGGCCTGTGTGTGACTCAGCCTCTGTTAGCTGGGTGGGTGTCATCAGCCCTGCCT CCCGGGCCCGAACCTGTGGCCGGGCTCAGGGTGCTGTGGAGATCAACTTCAAAAGAGCTA ACCCCCTTCCCAACACCCCAGCGACCCACATTCCCTCTGTGAAATCTACCTCAGAGTCGT ACCCTCAGAAGGACGGGTAAGCAGGAGGCCAGGGGGTCCCCAGGGCTGAGGTGGGGAGCT TCCTACGGCAAGAGCCTGCCGCCCCCACAATGAATCCAACCCCCTCCACTGCAAGCCTCT CCCTGGGTCTCAGCCCAGGCAGGGGGCGGCGGTGGACGCTACTGTCAGTGCATGTACCAT TCTGATCCACCTCTTCCAGGCCCCCCACCTCCTCACACCCCTCCCCTCCCCCTCAGTGCA GGGGAGTGGGGGGGTGTGTCTGGCGGGGAAGGGGCCGAGGACTCCAGAGACACATGGCAT CATACCACCGAAGGGAAATGGGGCAGGGGGTGGAGAGGGGAGGTGGGGCCCCTGAGCTCT CTGAACAAGTTGAAAGTCCAAATAAAACTTACCTGTTCCAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCAGTTGCTCCATCCCGTGGCCAGGTCGGAGGGAGGAGGCATCTTGTCTCTTGCCGTC CCTGCAGGCCAGTCCTGTTCTCCCTGCTCTCCCCACCCTGGGGAATAGGGAGGGTGGGAG AGGAGAGGGAGGGACCTGGAGGACTGGGAGCCTCAAGCCCGGAGAGGCTGCCCTGAGGCA CCGTGACCCTCAGACCAGGGCACTATCTGTGCGGCCGGTGCCCTCCTCCCAGGGCCCCCG GCCCTTAAGGCAGATGCTCCCCTCCACCCTGACCCCACTCACGCCCCGACACCACAGGTG CCCTGGGGCCTGTGTGTGACTCAGCCTCTGTTAGCTGGGTGGGTGTCATCAGCCCTGCCT CCCGGGCCCGAACCTGTGGCCGGGCTCAGGGTGCTGTGGAGATCAACTTCAAAAGAGCTA ACCCCCTTCCCAACACCCCAGCGACCCACATTCCCTCTGTGAAATCTACCTCAGAGTCGT ACCCTCAGAAGGACGGGTAAGCAGGAGGCCAGGGGGTCCCCAGGGCTGAGGTGGGGAGCT TCCTACGGCAAGAGCCTGCCGCCCCCACAATGAATCCAACCCCCTCCACTGCAAGCCTCT CCCTGGGTCTCAGCCCAGGCAGGGGGCGGCGGTGGACGCTACTGTCAGTGCATGTACCAT TCTGATCCACCTCTTCCAGGCCCCCCACCTCCTCACACCCCTCCCCTCCCCCTCAGTGCA GGGGAGTGGGGGGGTGTGTCTGGCGGGGAAGGGGCCGAGGACTCCAGAGACACATGGCAT CATACCACCGAAGGGAAATGGGGCAGGGGGTGGAGAGGGGAGGTGGGGCCCCTGAGCTCT CTGAACAAGTTGAAAGTCCAAATAAAACTTACCTGTTCCAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 30-340, - strand, RNAz p=0.999419 | |
| 516-616, - strand, RNAz p=0.653798 | |
| 645-880, + strand, RNAz p=0.999968 | |
| 655-777, - strand, RNAz p=0.998625 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 30-340, - strand, RNAz p=0.999419 | |
| 516-616, - strand, RNAz p=0.653798 | |
| 645-880, + strand, RNAz p=0.999968 | |
| 655-777, - strand, RNAz p=0.998625 |
| Predicted microRNA(s): 4 entry(ies) | More info |
| Predicted microRNA(s): 4 entry(ies) | Help | Less info |
| 676-763, + strand, RNAmicro p=0.999988 | |
| 676-803, - strand, RNAmicro p=0.999902 | |
| 56-159, + strand, RNAmicro p=0.999565 | |
| 202-331, - strand, RNAmicro p=0.971361 |
| Predicted microRNA(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 676-763, + strand, RNAmicro p=0.999988 | |
| 676-803, - strand, RNAmicro p=0.999902 | |
| 56-159, + strand, RNAmicro p=0.999565 | |
| 202-331, - strand, RNAmicro p=0.971361 |
| Similar Transcript(s): 14 entry(ies) | More info |
| Similar Transcript(s): 14 entry(ies) | Help | Less info |
| 245-340, CR851381 Normalized and Subtracted bovine endometrium tissues (emb|CR851381.2|), blast E-value=2e-21, identity=89.58% | |
| 245-340, 523257 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM258453.1|), blast E-value=2e-21, identity=89.58% | |
| 245-340, BovGen_18341 normal cattle brain Bos taurus cDNA clone (gb|CO890016.1|), blast E-value=2e-21, identity=89.58% | |
| 245-340, UMC-bcl_0A01-030-h06 Day 14 CL +8h prostaglandin F2-alpha bcl Bos (gb|CX948742.1|), blast E-value=2e-21, identity=89.58% | |
| 245-340, 1477582 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894892.1|), blast E-value=2e-21, identity=89.58% | |
| 245-340, 1480942 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT901692.1|), blast E-value=2e-21, identity=89.58% | |
| 811-880, 12121 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW315151.1|), blast E-value=1e-27, identity=98.57% | |
| 811-880, 16141 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW325469.1|), blast E-value=1e-27, identity=98.57% | |
| 811-880, 957635 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK769590.1|), blast E-value=1e-27, identity=98.57% | |
| 811-880, 1372849 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN536726.1|), blast E-value=1e-27, identity=98.57% | |
| 714-866, PADT0811002_M06F porcine adipose tissue cDNA library (PADT) Sus (gb|EB412063.1|), blast E-value=0, identity=95.42% | |
| 714-879, PADT0811002_M06R porcine adipose tissue cDNA library (PADT) Sus (gb|EB412064.1|), blast E-value=0, identity=95.78% | |
| 714-777, PADT0811002_M06F porcine adipose tissue cDNA library (PADT) Sus (gb|EB412063.1|), blast E-value=0.00000000000003, identity=89.06% | |
| 714-777, PADT0811002_M06R porcine adipose tissue cDNA library (PADT) Sus (gb|EB412064.1|), blast E-value=0.00000000000003, identity=89.06% |
| Similar Transcript(s): 14 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 245-340, CR851381 Normalized and Subtracted bovine endometrium tissues (emb|CR851381.2|), blast E-value=2e-21, identity=89.58% | |
| 245-340, 523257 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM258453.1|), blast E-value=2e-21, identity=89.58% | |
| 245-340, BovGen_18341 normal cattle brain Bos taurus cDNA clone (gb|CO890016.1|), blast E-value=2e-21, identity=89.58% | |
| 245-340, UMC-bcl_0A01-030-h06 Day 14 CL +8h prostaglandin F2-alpha bcl Bos (gb|CX948742.1|), blast E-value=2e-21, identity=89.58% | |
| 245-340, 1477582 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894892.1|), blast E-value=2e-21, identity=89.58% | |
| 245-340, 1480942 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT901692.1|), blast E-value=2e-21, identity=89.58% | |
| 811-880, 12121 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW315151.1|), blast E-value=1e-27, identity=98.57% | |
| 811-880, 16141 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW325469.1|), blast E-value=1e-27, identity=98.57% | |
| 811-880, 957635 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK769590.1|), blast E-value=1e-27, identity=98.57% | |
| 811-880, 1372849 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN536726.1|), blast E-value=1e-27, identity=98.57% | |
| 714-866, PADT0811002_M06F porcine adipose tissue cDNA library (PADT) Sus (gb|EB412063.1|), blast E-value=0, identity=95.42% | |
| 714-879, PADT0811002_M06R porcine adipose tissue cDNA library (PADT) Sus (gb|EB412064.1|), blast E-value=0, identity=95.78% | |
| 714-777, PADT0811002_M06F porcine adipose tissue cDNA library (PADT) Sus (gb|EB412063.1|), blast E-value=0.00000000000003, identity=89.06% | |
| 714-777, PADT0811002_M06R porcine adipose tissue cDNA library (PADT) Sus (gb|EB412064.1|), blast E-value=0.00000000000003, identity=89.06% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_014726, + |
| Aligned organism(s): 14 entry(ies) | More info |
| Aligned organism(s): 14 entry(ies) | Help | Less info |
| 30-389, gnl|bosTau2|chr19 (32555270-32554887) | |
| 30-389, gnl|Hg17|chr17 (43143527-43143929) | |
| 30-389, gnl|Mm7|chr11 (97246078-97245692) | |
| 446-880, gnl|bosTau2|chr19 (30839374-30838930) | |
| 446-880, gnl|canFam2|chr9 (27381214-27381705) | |
| 446-880, gnl|hg17|chr17 (43143989-43144445) | |
| 446-880, gnl|Hg17|chr17 (43143988-43144417) | |
| 446-880, gnl|loxAfr1|scaffold_5605 (100854-101329) | |
| 446-880, gnl|mm7|chr11 (97245632-97245185) | |
| 446-880, gnl|Mm7|chr11 (97245631-97245214) | |
| 446-880, gnl|monDom2|scaffold_18 (46874516-46874001) | |
| 446-880, gnl|panTro1|chr19_random (42015687-42016142) | |
| 446-880, gnl|rheMac2|chr16 (31920319-31920775) | |
| 446-880, gnl|rn3|chr10 (85870691-85870254) |
| Aligned organism(s): 14 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-389, gnl|bosTau2|chr19 (32555270-32554887) | |
| 30-389, gnl|Hg17|chr17 (43143527-43143929) | |
| 30-389, gnl|Mm7|chr11 (97246078-97245692) | |
| 446-880, gnl|bosTau2|chr19 (30839374-30838930) | |
| 446-880, gnl|canFam2|chr9 (27381214-27381705) | |
| 446-880, gnl|hg17|chr17 (43143989-43144445) | |
| 446-880, gnl|Hg17|chr17 (43143988-43144417) | |
| 446-880, gnl|loxAfr1|scaffold_5605 (100854-101329) | |
| 446-880, gnl|mm7|chr11 (97245632-97245185) | |
| 446-880, gnl|Mm7|chr11 (97245631-97245214) | |
| 446-880, gnl|monDom2|scaffold_18 (46874516-46874001) | |
| 446-880, gnl|panTro1|chr19_random (42015687-42016142) | |
| 446-880, gnl|rheMac2|chr16 (31920319-31920775) | |
| 446-880, gnl|rn3|chr10 (85870691-85870254) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| eru (0.120048) |