Ss1.1-Pig2-67L10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGCCCTCGATGCAGTGCTTACATTATCAAGATGAATGATGGAAGCTGTAATCATATGAC CTGTGCAGTGTGTGGCTGTGAATTCTGTTGGCTTTGTATGAAAGAGATCTCAGACTTGCA TTACCTCAGTCCCTCTGGCTGTACATTCTGGGGCAAGAAGCCATGGAGCCGTAAGAAGAA AATTCTTTGGCAGCTGGGAACATTGATTGGTGCTCCAGTGGGGATTTCCCTCATTGCTGG CATTGCCATTCCTGCCATGGTCATTGGCATTCCTGTTTATGTTGGCAGGAAGATTCATAG CAGGTATGAAGGAAGGAAAACCTCCAAACATAAGAGGAATTTGGCTATCACAGGAGGAGT GACTTTATCGGTCATTGCATCCCCAGTTATTGCTGCAGTTAGTGTTGGTATTGGCGTTCC TATTATGCTGGCTTATGTCTATGGGGTTGTGCCCATTTCTCTCTGTCGAGGAGGTGGCTG TGGAGTTAGCACAGCTAATGGAAAGGGAGTGAAAATTGAGTTTGATGAAGATGATGGTCC AATCACAGTGGCAGATGCCTGGCGAGCCCTCAAGAATCCCAGCATTGGGGAAAGTAGCAT TGAAGGTCTAACTAGTGTATTGAGCACCAGTGGAAGCCCTACAGATGGACTCAGTGTTAT GCAGGGTCCATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGCCCTCGATGCAGTGCTTACATTATCAAGATGAATGATGGAAGCTGTAATCATATGAC CTGTGCAGTGTGTGGCTGTGAATTCTGTTGGCTTTGTATGAAAGAGATCTCAGACTTGCA TTACCTCAGTCCCTCTGGCTGTACATTCTGGGGCAAGAAGCCATGGAGCCGTAAGAAGAA AATTCTTTGGCAGCTGGGAACATTGATTGGTGCTCCAGTGGGGATTTCCCTCATTGCTGG CATTGCCATTCCTGCCATGGTCATTGGCATTCCTGTTTATGTTGGCAGGAAGATTCATAG CAGGTATGAAGGAAGGAAAACCTCCAAACATAAGAGGAATTTGGCTATCACAGGAGGAGT GACTTTATCGGTCATTGCATCCCCAGTTATTGCTGCAGTTAGTGTTGGTATTGGCGTTCC TATTATGCTGGCTTATGTCTATGGGGTTGTGCCCATTTCTCTCTGTCGAGGAGGTGGCTG TGGAGTTAGCACAGCTAATGGAAAGGGAGTGAAAATTGAGTTTGATGAAGATGATGGTCC AATCACAGTGGCAGATGCCTGGCGAGCCCTCAAGAATCCCAGCATTGGGGAAAGTAGCAT TGAAGGTCTAACTAGTGTATTGAGCACCAGTGGAAGCCCTACAGATGGACTCAGTGTTAT GCAGGGTCCATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 573-672, + strand, RNAz p=0.876041 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 573-672, + strand, RNAz p=0.876041 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 121-292, gnl|bosTau2|chr14 (38071545-38071374) | |
| 121-292, gnl|canFam2|chr13 (5167627-5167817) | |
| 121-292, gnl|danRer3|chr19 (42899695-42899519) | |
| 121-292, gnl|dasNov1|scaffold_4297 (41548-41740) | |
| 121-292, gnl|echTel1|scaffold_293348 (8632-8443) | |
| 121-292, gnl|fr1|chrUn (11939324-11939146) | |
| 121-292, gnl|galGal2|chr2 (127534354-127534546) | |
| 121-292, gnl|hg17|chr8 (101350183-101350374) | |
| 121-292, gnl|Hg17|chr8 (101350360-101350189) | |
| 121-292, gnl|loxAfr1|scaffold_124254 (34004-34195) | |
| 121-292, gnl|mm7|chr15 (36362334-36362515) | |
| 121-292, gnl|Mm7|chr15 (36362507-36362336) | |
| 121-292, gnl|monDom2|scaffold_3 (63674695-63674496) | |
| 121-292, gnl|oryCun1|scaffold_208341 (26063-25883) | |
| 121-292, gnl|panTro1|chr7 (103720907-103721098) | |
| 121-292, gnl|rheMac2|chr8 (102785172-102785363) | |
| 121-292, gnl|rn3|chr7 (71797416-71797598) | |
| 121-292, gnl|tetNig1|chr8 (10038097-10038270) | |
| 121-292, gnl|xenTro1|scaffold_59 (881884-881684) | |
| 407-536, gnl|bosTau2|chr14 (38067727-38067598) | |
| 407-536, gnl|canFam2|chr13 (5164181-5164358) | |
| 407-536, gnl|danRer3|chr19 (42908011-42907842) | |
| 407-536, gnl|dasNov1|scaffold_4297 (39148-39325) | |
| 407-536, gnl|echTel1|scaffold_235955 (130-307) | |
| 407-536, gnl|fr1|chrUn (11940680-11940503) | |
| 407-536, gnl|galGal2|chr2 (127527683-127527860) | |
| 407-536, gnl|hg17|chr8 (101345434-101345611) | |
| 407-536, gnl|Hg17|chr8 (101345600-101345471) | |
| 407-536, gnl|loxAfr1|scaffold_11938 (26490-26667) | |
| 407-536, gnl|mm7|chr15 (36356453-36356630) | |
| 407-536, gnl|Mm7|chr15 (36356619-36356490) | |
| 407-536, gnl|monDom2|scaffold_3 (63680368-63680184) | |
| 407-536, gnl|oryCun1|scaffold_53527 (1451-1277) | |
| 407-536, gnl|panTro1|chr7 (103716079-103716256) | |
| 407-536, gnl|rheMac2|chr8 (102780747-102780924) | |
| 407-536, gnl|rn3|chr7 (71791462-71791639) | |
| 407-536, gnl|tetNig1|chr8 (10036887-10037039) | |
| 407-536, gnl|xenTro1|scaffold_59 (882782-882614) | |
| 538-672, gnl|bosTau2|chr2 (74201665-74201531) | |
| 538-672, gnl|canFam2|chr2 (71319529-71319397) | |
| 538-672, gnl|danRer3|chr19 (68061168-68061297) | |
| 538-672, gnl|dasNov1|scaffold_69733 (3102-3234) | |
| 538-672, gnl|fr1|chrUn (212586806-212586680) | |
| 538-672, gnl|galGal2|chr23 (4719436-4719568) | |
| 538-672, gnl|hg17|chr1 (33076996-33077128) | |
| 538-672, gnl|Hg17|chr1 (33077164-33077030) | |
| 538-672, gnl|loxAfr1|scaffold_114422 (6101-5988) | |
| 538-672, gnl|mm7|chr4 (128525148-128525016) | |
| 538-672, gnl|Mm7|chr4 (128524978-128525112) | |
| 538-672, gnl|monDom2|scaffold_43 (6778293-6778161) | |
| 538-672, gnl|oryCun1|scaffold_206269 (43456-43588) | |
| 538-672, gnl|panTro1|chr1_random (60480889-60481021) | |
| 538-672, gnl|rheMac2|chr1 (35733647-35733779) | |
| 538-672, gnl|rn3|chr5 (148247834-148247702) | |
| 538-672, gnl|tetNig1|chr8 (10036623-10036755) | |
| 538-672, gnl|xenTro1|scaffold_439 (216953-217085) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-292, gnl|bosTau2|chr14 (38071545-38071374) | |
| 121-292, gnl|canFam2|chr13 (5167627-5167817) | |
| 121-292, gnl|danRer3|chr19 (42899695-42899519) | |
| 121-292, gnl|dasNov1|scaffold_4297 (41548-41740) | |
| 121-292, gnl|echTel1|scaffold_293348 (8632-8443) | |
| 121-292, gnl|fr1|chrUn (11939324-11939146) | |
| 121-292, gnl|galGal2|chr2 (127534354-127534546) | |
| 121-292, gnl|hg17|chr8 (101350183-101350374) | |
| 121-292, gnl|Hg17|chr8 (101350360-101350189) | |
| 121-292, gnl|loxAfr1|scaffold_124254 (34004-34195) | |
| 121-292, gnl|mm7|chr15 (36362334-36362515) | |
| 121-292, gnl|Mm7|chr15 (36362507-36362336) | |
| 121-292, gnl|monDom2|scaffold_3 (63674695-63674496) | |
| 121-292, gnl|oryCun1|scaffold_208341 (26063-25883) | |
| 121-292, gnl|panTro1|chr7 (103720907-103721098) | |
| 121-292, gnl|rheMac2|chr8 (102785172-102785363) | |
| 121-292, gnl|rn3|chr7 (71797416-71797598) | |
| 121-292, gnl|tetNig1|chr8 (10038097-10038270) | |
| 121-292, gnl|xenTro1|scaffold_59 (881884-881684) | |
| 407-536, gnl|bosTau2|chr14 (38067727-38067598) | |
| 407-536, gnl|canFam2|chr13 (5164181-5164358) | |
| 407-536, gnl|danRer3|chr19 (42908011-42907842) | |
| 407-536, gnl|dasNov1|scaffold_4297 (39148-39325) | |
| 407-536, gnl|echTel1|scaffold_235955 (130-307) | |
| 407-536, gnl|fr1|chrUn (11940680-11940503) | |
| 407-536, gnl|galGal2|chr2 (127527683-127527860) | |
| 407-536, gnl|hg17|chr8 (101345434-101345611) | |
| 407-536, gnl|Hg17|chr8 (101345600-101345471) | |
| 407-536, gnl|loxAfr1|scaffold_11938 (26490-26667) | |
| 407-536, gnl|mm7|chr15 (36356453-36356630) | |
| 407-536, gnl|Mm7|chr15 (36356619-36356490) | |
| 407-536, gnl|monDom2|scaffold_3 (63680368-63680184) | |
| 407-536, gnl|oryCun1|scaffold_53527 (1451-1277) | |
| 407-536, gnl|panTro1|chr7 (103716079-103716256) | |
| 407-536, gnl|rheMac2|chr8 (102780747-102780924) | |
| 407-536, gnl|rn3|chr7 (71791462-71791639) | |
| 407-536, gnl|tetNig1|chr8 (10036887-10037039) | |
| 407-536, gnl|xenTro1|scaffold_59 (882782-882614) | |
| 538-672, gnl|bosTau2|chr2 (74201665-74201531) | |
| 538-672, gnl|canFam2|chr2 (71319529-71319397) | |
| 538-672, gnl|danRer3|chr19 (68061168-68061297) | |
| 538-672, gnl|dasNov1|scaffold_69733 (3102-3234) | |
| 538-672, gnl|fr1|chrUn (212586806-212586680) | |
| 538-672, gnl|galGal2|chr23 (4719436-4719568) | |
| 538-672, gnl|hg17|chr1 (33076996-33077128) | |
| 538-672, gnl|Hg17|chr1 (33077164-33077030) | |
| 538-672, gnl|loxAfr1|scaffold_114422 (6101-5988) | |
| 538-672, gnl|mm7|chr4 (128525148-128525016) | |
| 538-672, gnl|Mm7|chr4 (128524978-128525112) | |
| 538-672, gnl|monDom2|scaffold_43 (6778293-6778161) | |
| 538-672, gnl|oryCun1|scaffold_206269 (43456-43588) | |
| 538-672, gnl|panTro1|chr1_random (60480889-60481021) | |
| 538-672, gnl|rheMac2|chr1 (35733647-35733779) | |
| 538-672, gnl|rn3|chr5 (148247834-148247702) | |
| 538-672, gnl|tetNig1|chr8 (10036623-10036755) | |
| 538-672, gnl|xenTro1|scaffold_439 (216953-217085) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |