Non-Coding RNA Search

Ss1.1-Pig2-67N21.5

Sequence:


               
               GCAGTATCGGTGGCGGCACGGCGGCGACATGGCCATCATCTCAGAGGATGACTTTCATCA
CAGCTCCAACTCCACCTACAGAACTGCAAGCAGCTCTCTCCGGGCTGACCAAGAAGCACT
GCTCGAGAAGCTTCTGGACCACCCACCACCCAGCCTGCAGAGGCCTGAGGACCGCTTCAA
TGCTGCTTACATCGTCTTCTTCTGCTTGGGCATCGGCAGCCTGCTGCCATGGAACTTCTT
TGTCACTGCCCAGGAGTACTGGCTATTCAAACTCAGCAACTGCTCCAGCCAAGCCACGGG
GGAGGAGCCTAAGGGCTCGGACATCCTGAACTACTTTGAGAGCTACCTGGCTGTGGCCTC
CACCGTGCCCTCCATACTGTGCCTCGTGGTCAACTTCCTGCTTGTCAACAGGGTTCCGCT
TCGTGTCCGCGTGCTGGCCTCGCTGACTGTCATGCTGTCCATCTTCGTGATGATGACGGT
GCTGGTGAAGGTGGACACCTCCTCCTGGACCCGCAGCTTCTTTGCCCTCACCATCATCTG
CATGGCCATCCTCAGCGGCACCTCCACCATCTTCAGTAGCAGCGTCTTCGGCATGACTGG
CTCCTTCCCCATGAGGAATTCCCAGGCGCTGATATCAGGAGGAGCCATGGGGGGCACCAT
CAGTGCCGTGGCCTCACTGGTGGACCTGGCGGCGTCCAGCAACGTGACGGACAGCGCCCT
GGCCTTCTTCCTGACGGCGGACGTCTTCCTGGCGCTCTGCATCGGGCTCTACCTGCTGCT
GCCGCGGTTGGACTACGCCAGGTACTACATGAAGCCTGTTTGGCCAGCTGTGTTTTCTGG
TGAAGAGCAGCCACCCCAGGACTCCTCCAGCCCCTCTTCGGGGGCCCCCAGATCCAGCGA
CTCCTCGACACCACCCCTCCGCCCCATCCTGAAGAAGACGGCCGGCCTGGGCTTCTGCAT
CATCTACCTCTTCTTTATCACCAGCATCATCTTCCCCGCCATCTCCACCAACATCGAGTC
CCTCGGCAAGGGCTCCGGCTCACCATGGACCACCAAGTTCTTCGTCCCCCTCACCACCTT
CCTCCTGTACAACTTTGCCGACCTGTGCGGCCGGCAGATCACTGCCTGGATCCAGGTGCC
GGGGCCCAGAAGCAAGGTGCTCCCAGGGCTCGTGCTCCTCCGGACCTGCCTCGTCCCCCT
CTTTGTGCTCTGCAACTACCAGCCCCGCGTCCACCTGCAGGTGGTGGTCTTCCAGTCCGA
CGTGTACCCGGTGCTCTTCACCTCCCTGCTGGGGCTCAGCAACGGCTACCTCAGCACCCT
GGCTCTCATTTACGGGCCCAAGATCGTGCCCAGGGAGCTGGCCGAGGCCACAGGGGTGGT
GATGACCTTTTACCTGTGCTTGGGTCTGATGCTCGGCTCAGCCTGCTCTGCCCTAATTGT
GCATCTCATCTAGGAGGGGCGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTATCGGTGGCGGCACGGCGGCGACATGGCCATCATCTCAGAGGATGACTTTCATCA
CAGCTCCAACTCCACCTACAGAACTGCAAGCAGCTCTCTCCGGGCTGACCAAGAAGCACT
GCTCGAGAAGCTTCTGGACCACCCACCACCCAGCCTGCAGAGGCCTGAGGACCGCTTCAA
TGCTGCTTACATCGTCTTCTTCTGCTTGGGCATCGGCAGCCTGCTGCCATGGAACTTCTT
TGTCACTGCCCAGGAGTACTGGCTATTCAAACTCAGCAACTGCTCCAGCCAAGCCACGGG
GGAGGAGCCTAAGGGCTCGGACATCCTGAACTACTTTGAGAGCTACCTGGCTGTGGCCTC
CACCGTGCCCTCCATACTGTGCCTCGTGGTCAACTTCCTGCTTGTCAACAGGGTTCCGCT
TCGTGTCCGCGTGCTGGCCTCGCTGACTGTCATGCTGTCCATCTTCGTGATGATGACGGT
GCTGGTGAAGGTGGACACCTCCTCCTGGACCCGCAGCTTCTTTGCCCTCACCATCATCTG
CATGGCCATCCTCAGCGGCACCTCCACCATCTTCAGTAGCAGCGTCTTCGGCATGACTGG
CTCCTTCCCCATGAGGAATTCCCAGGCGCTGATATCAGGAGGAGCCATGGGGGGCACCAT
CAGTGCCGTGGCCTCACTGGTGGACCTGGCGGCGTCCAGCAACGTGACGGACAGCGCCCT
GGCCTTCTTCCTGACGGCGGACGTCTTCCTGGCGCTCTGCATCGGGCTCTACCTGCTGCT
GCCGCGGTTGGACTACGCCAGGTACTACATGAAGCCTGTTTGGCCAGCTGTGTTTTCTGG
TGAAGAGCAGCCACCCCAGGACTCCTCCAGCCCCTCTTCGGGGGCCCCCAGATCCAGCGA
CTCCTCGACACCACCCCTCCGCCCCATCCTGAAGAAGACGGCCGGCCTGGGCTTCTGCAT
CATCTACCTCTTCTTTATCACCAGCATCATCTTCCCCGCCATCTCCACCAACATCGAGTC
CCTCGGCAAGGGCTCCGGCTCACCATGGACCACCAAGTTCTTCGTCCCCCTCACCACCTT
CCTCCTGTACAACTTTGCCGACCTGTGCGGCCGGCAGATCACTGCCTGGATCCAGGTGCC
GGGGCCCAGAAGCAAGGTGCTCCCAGGGCTCGTGCTCCTCCGGACCTGCCTCGTCCCCCT
CTTTGTGCTCTGCAACTACCAGCCCCGCGTCCACCTGCAGGTGGTGGTCTTCCAGTCCGA
CGTGTACCCGGTGCTCTTCACCTCCCTGCTGGGGCTCAGCAACGGCTACCTCAGCACCCT
GGCTCTCATTTACGGGCCCAAGATCGTGCCCAGGGAGCTGGCCGAGGCCACAGGGGTGGT
GATGACCTTTTACCTGTGCTTGGGTCTGATGCTCGGCTCAGCCTGCTCTGCCCTAATTGT
GCATCTCATCTAGGAGGGGCGATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55958986|emb|CAI13424.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55958986|emb|CAI13424.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1275-1394, + strand, RNAz p=0.925374

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1275-1394, + strand, RNAz p=0.925374

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               799-1464, gnl|bosTau2|chr28 (21676733-21676068)
               

               
               799-1464, gnl|Hg17|chr10 (72791714-72792382)
               

               
               799-1464, gnl|Mm7|chr10 (60234688-60234016)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               799-1464, gnl|bosTau2|chr28 (21676733-21676068)
               

               
               799-1464, gnl|Hg17|chr10 (72791714-72792382)
               

               
               799-1464, gnl|Mm7|chr10 (60234688-60234016)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nca (0.136874)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               clu (0.119646)

	799-1464, gnl\|bosTau2\|chr28 (21676733-21676068)
	799-1464, gnl\|Hg17\|chr10 (72791714-72792382)
	799-1464, gnl\|Mm7\|chr10 (60234688-60234016)