Non-Coding RNA Search

Ss1.1-Pig2-67O18.5

Sequence:


               
               TTATTTCGCTTATCAAGAGAAAGCAAAAAAGTCTCAGCACGTACTTTTCTTTTTCAAAGA
TCACCTTTTTTTTTTCTTCTTCTTATTTTCTCGATAAGAGAAAAGCTTTTGAAAGAGAGC
GAGACAGCTGAAGCACCAGCTGGCCAGCCCAGGTGGAAAACAAGAGTGAAAGTGGGGCTT
AGTGGGAGCGCAGCGCCTCTTTCGCAAGCCGCAGGGCCACCACCAGCGCTTGAGCCTTGG
ATCCCTCAACGTACTGCGAGACGCCGGTGTACAGCCCGGACCTGTGCCCCAACATGATCG
CCGCCCAGGCCAAGCTGGTCTACCAGCTCAACAAATACTACACGGAGCGCTGCCAGGCGC
GCAAGGCGGCCATCGCCAAGACCATCCGGGAGGTCTGTAAGGTGGTCTCGGACGTGCTCA
AGGAAGTGGAGGTACAGGAGCCCCGCTTCATCAGCTCCCTGAGCGAGATCGATGCTCGCT
ACGAGGGGCTGGAGGTCATCTCGCCGACAGAGTTCGAGGTGGTGCTCTACCTAAACCAGA
TGGGCGTCTTCAACTTCGTGGACGACGGCTCGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTCGCTTATCAAGAGAAAGCAAAAAAGTCTCAGCACGTACTTTTCTTTTTCAAAGA
TCACCTTTTTTTTTTCTTCTTCTTATTTTCTCGATAAGAGAAAAGCTTTTGAAAGAGAGC
GAGACAGCTGAAGCACCAGCTGGCCAGCCCAGGTGGAAAACAAGAGTGAAAGTGGGGCTT
AGTGGGAGCGCAGCGCCTCTTTCGCAAGCCGCAGGGCCACCACCAGCGCTTGAGCCTTGG
ATCCCTCAACGTACTGCGAGACGCCGGTGTACAGCCCGGACCTGTGCCCCAACATGATCG
CCGCCCAGGCCAAGCTGGTCTACCAGCTCAACAAATACTACACGGAGCGCTGCCAGGCGC
GCAAGGCGGCCATCGCCAAGACCATCCGGGAGGTCTGTAAGGTGGTCTCGGACGTGCTCA
AGGAAGTGGAGGTACAGGAGCCCCGCTTCATCAGCTCCCTGAGCGAGATCGATGCTCGCT
ACGAGGGGCTGGAGGTCATCTCGCCGACAGAGTTCGAGGTGGTGCTCTACCTAAACCAGA
TGGGCGTCTTCAACTTCGTGGACGACGGCTCGCTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|45383732|ref|NP_989521.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|45383732|ref|NP_989521.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               186-576, gnl|bosTau2|chr12 (13203977-13204369)
               

               
               186-576, gnl|Hg17|chr13 (34948385-34947993)
               

               
               186-576, gnl|Mm7|chr3 (55909941-55910331)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-576, gnl|bosTau2|chr12 (13203977-13204369)
               

               
               186-576, gnl|Hg17|chr13 (34948385-34947993)
               

               
               186-576, gnl|Mm7|chr3 (55909941-55910331)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               ebs (0.118301)

	186-576, gnl\|bosTau2\|chr12 (13203977-13204369)
	186-576, gnl\|Hg17\|chr13 (34948385-34947993)
	186-576, gnl\|Mm7\|chr3 (55909941-55910331)

	amn (0.417711)
	ece (0.229305)
	fhi (0.169578)
	nco (0.161734)
	ebs (0.118301)