Non-Coding RNA Search

Ss1.1-Pig2-68B01.5

Sequence:


               
               GAACCTGCATCCTCATGGATTCTAGTCAGGTTTGTTACTGCTGAGCCACGAGGGGCACTC
CCTTGGTGTGTTTTTCTGAAGCGCCCAGGAGGCATCTCTGAATTGCAAACCTCCAGGGAG
TTCGCCCCCTGTCTCAGTGGGAGTTTGAGCCCAGGCACCAGCTCCAGTGGTAATTCCCTG
CTTGCCGGAGCTTCCTTTTAGCCTCGCTTTCTTCTCCCTGAAAAAGAAAAGCCCTTTCTG
CCCCAGCTCTGAGAGCTTGCAGATATCGTGGTGTCTCATTGTAGAGCTTACCATGAGAGA
GTTGCCCCTGCCTTCCTGTCACGGCCGCTTGTCATCTCTTGCAATAATCCTTTTGAACAA
AGCCTTCCCTTAGCTGTGTCAGAATTTATTCTCATTTGGCAAGAAGGTATGGAAGACTTG
CATATTTTAAAGTGGGGACCAGGTCTAATGCCAGTGATGGTGTTGAATGTGTGTACAACA
GCTCTGCTGGACACCCAAGAGCATGCCAACTGGAAAGGTGCCCCGTCCCTAGGGAGCCCC
GCAAAGGAGAGGTTCTGCAGAATCCAAGCCAAGCACCCCCAAAGTCACCCTTCCCCACAT
CCTCTCTTCCCATCCACTGTGTGTACAGACGTACATGTCTGGGATCCATGGCAATGTGAA
TTTTTATTTGGGAGATTGTTCACGGAAAACAGACCCTCTTTTCTCTCGTCCACCTATTAA
TTGTTTACAATATTTGTATATCTATGCAAAATACTTGAATGGGCCGTGGTGCCTTTTTTC
CTTGTTTGTATTTAATTAAATTGTCGTTTGAAATGTTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCTGCATCCTCATGGATTCTAGTCAGGTTTGTTACTGCTGAGCCACGAGGGGCACTC
CCTTGGTGTGTTTTTCTGAAGCGCCCAGGAGGCATCTCTGAATTGCAAACCTCCAGGGAG
TTCGCCCCCTGTCTCAGTGGGAGTTTGAGCCCAGGCACCAGCTCCAGTGGTAATTCCCTG
CTTGCCGGAGCTTCCTTTTAGCCTCGCTTTCTTCTCCCTGAAAAAGAAAAGCCCTTTCTG
CCCCAGCTCTGAGAGCTTGCAGATATCGTGGTGTCTCATTGTAGAGCTTACCATGAGAGA
GTTGCCCCTGCCTTCCTGTCACGGCCGCTTGTCATCTCTTGCAATAATCCTTTTGAACAA
AGCCTTCCCTTAGCTGTGTCAGAATTTATTCTCATTTGGCAAGAAGGTATGGAAGACTTG
CATATTTTAAAGTGGGGACCAGGTCTAATGCCAGTGATGGTGTTGAATGTGTGTACAACA
GCTCTGCTGGACACCCAAGAGCATGCCAACTGGAAAGGTGCCCCGTCCCTAGGGAGCCCC
GCAAAGGAGAGGTTCTGCAGAATCCAAGCCAAGCACCCCCAAAGTCACCCTTCCCCACAT
CCTCTCTTCCCATCCACTGTGTGTACAGACGTACATGTCTGGGATCCATGGCAATGTGAA
TTTTTATTTGGGAGATTGTTCACGGAAAACAGACCCTCTTTTCTCTCGTCCACCTATTAA
TTGTTTACAATATTTGTATATCTATGCAAAATACTTGAATGGGCCGTGGTGCCTTTTTTC
CTTGTTTGTATTTAATTAAATTGTCGTTTGAAATGTTAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               127-817, gnl|bosTau2|chr7 (47980043-47980755)
               

               
               127-817, gnl|Hg17|chr5 (156837626-156836891)
               

               
               127-817, gnl|Mm7|chr11 (46103403-46104100)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-817, gnl|bosTau2|chr7 (47980043-47980755)
               

               
               127-817, gnl|Hg17|chr5 (156837626-156836891)
               

               
               127-817, gnl|Mm7|chr11 (46103403-46104100)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nms (0.427716)
               

               
               cje (0.330469)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               cje (0.330469)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	127-817, gnl\|bosTau2\|chr7 (47980043-47980755)
	127-817, gnl\|Hg17\|chr5 (156837626-156836891)
	127-817, gnl\|Mm7\|chr11 (46103403-46104100)

	nms (0.427716)
	cje (0.330469)
	col (0.195008)
	cmu (0.186393)
	mcp (0.170648)
	cut (0.169924)
	cag (0.151194)
	ese (0.126502)
	pgl (0.118483)
	eje (0.0988338)