Ss1.1-Pig2-68B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCCAGGCAGGCCTCAGCGTGGTGGCTATCGTGGCCGTGGACATCTTCTTCCACTTCTT CTACATCCTCACCATCCCCAGTGACCTCAAGTTCGCCAACCGCCTCCCAGACAGCGCCCT CGCTGGTCTAGCTTATTCAAACCTGGTGTACGACTGGGTGAAGGCGGCCGTCCTCTTCGG CGTCGTCAACACCGTGGCGCGCCTCGACCACTTGGACCCACCCCAGCCTCCCAAGTGCAT CACAGCGCTCTACGTGTTCGCCGAGACGCACTTTGACCGTGGCATCAACGACTGGCTTTG CAAGTACGTGTATGACCACATTGGTGGGGAGCACTCTTCGGTGATCCCAGAGCTGGGGGC CACTGTGGCCACATTTGCTATCACCACTCTGTGGCTTGGGCCTTGTGATATTGTCTACCT GTGGTCATGCCTTAACTGCTTTGGCCTCAACTTTGAGCTCTGGGTACAGAAGCTGGCAGA GTGGGGACCCCTAGCACACATTGAGGCCTCTCTGTCGGAGCAGATGTCCCGCAGGGTCCG AGCCATCTTTGGGGCCATGAACTTCTGGGCCATCATCATGTACAACCTTGTAAGCCTGAA CAGCCGTGAGTTCACAGAACTGGTCGCACAGCGCCTGCTACTCAGAGGGTTCCCCCAGAC CACGCTGGCTGTCCTGTTTGTCACCTACTGTGGTGTCCAACTGGTGAAGGAGCGAGAGCG AACCCTGGCGCTGGAGGAGGAGCAGAAGCAGGACAAAGAGAAGCCAGAGTAGAGGGGACA GGAAGAGGAACAGGCTCTGCTTAGCTGTTCCTGGGCCCAGGCCCAGCCCAGGCCAGATGG GGCCTGACCGATAGAATAAAAGATTTTTCTACCATGAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCCAGGCAGGCCTCAGCGTGGTGGCTATCGTGGCCGTGGACATCTTCTTCCACTTCTT CTACATCCTCACCATCCCCAGTGACCTCAAGTTCGCCAACCGCCTCCCAGACAGCGCCCT CGCTGGTCTAGCTTATTCAAACCTGGTGTACGACTGGGTGAAGGCGGCCGTCCTCTTCGG CGTCGTCAACACCGTGGCGCGCCTCGACCACTTGGACCCACCCCAGCCTCCCAAGTGCAT CACAGCGCTCTACGTGTTCGCCGAGACGCACTTTGACCGTGGCATCAACGACTGGCTTTG CAAGTACGTGTATGACCACATTGGTGGGGAGCACTCTTCGGTGATCCCAGAGCTGGGGGC CACTGTGGCCACATTTGCTATCACCACTCTGTGGCTTGGGCCTTGTGATATTGTCTACCT GTGGTCATGCCTTAACTGCTTTGGCCTCAACTTTGAGCTCTGGGTACAGAAGCTGGCAGA GTGGGGACCCCTAGCACACATTGAGGCCTCTCTGTCGGAGCAGATGTCCCGCAGGGTCCG AGCCATCTTTGGGGCCATGAACTTCTGGGCCATCATCATGTACAACCTTGTAAGCCTGAA CAGCCGTGAGTTCACAGAACTGGTCGCACAGCGCCTGCTACTCAGAGGGTTCCCCCAGAC CACGCTGGCTGTCCTGTTTGTCACCTACTGTGGTGTCCAACTGGTGAAGGAGCGAGAGCG AACCCTGGCGCTGGAGGAGGAGCAGAAGCAGGACAAAGAGAAGCCAGAGTAGAGGGGACA GGAAGAGGAACAGGCTCTGCTTAGCTGTTCCTGGGCCCAGGCCCAGCCCAGGCCAGATGG GGCCTGACCGATAGAATAAAAGATTTTTCTACCATGAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 685-876, + strand, RNAz p=0.68767 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 685-876, + strand, RNAz p=0.68767 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_020707, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 122-268, gnl|bosTau2|chr22 (7759925-7759779) | |
| 122-268, gnl|canFam2|chr23 (14866129-14866289) | |
| 122-268, gnl|danRer3|chr24 (9532298-9532145) | |
| 122-268, gnl|echTel1|scaffold_316638 (47679-47519) | |
| 122-268, gnl|fr1|chrUn (122648806-122648647) | |
| 122-268, gnl|galGal2|chr2 (1580592-1580748) | |
| 122-268, gnl|hg17|chr3 (42713492-42713652) | |
| 122-268, gnl|Hg17|chr3 (42713642-42713496) | |
| 122-268, gnl|mm7|chr9 (121488698-121488857) | |
| 122-268, gnl|Mm7|chr9 (121488848-121488702) | |
| 122-268, gnl|monDom2|scaffold_5 (77871821-77871978) | |
| 122-268, gnl|oryCun1|scaffold_213366 (53814-53984) | |
| 122-268, gnl|panTro1|chr2 (43918588-43918748) | |
| 122-268, gnl|rheMac2|chr2 (93874669-93874509) | |
| 122-268, gnl|rn3|chr8 (127170137-127169978) | |
| 122-268, gnl|tetNig1|chr6 (3105343-3105502) | |
| 122-268, gnl|xenTro1|scaffold_451 (230844-231023) | |
| 299-506, gnl|bosTau2|chr22 (14277216-14277423) | |
| 299-506, gnl|Hg17|chr3 (42710319-42710112) | |
| 299-506, gnl|Mm7|chr9 (121485802-121485595) | |
| 646-876, gnl|bosTau2|chr22 (14278147-14278378) | |
| 646-876, gnl|Hg17|chr3 (42709373-42709159) | |
| 646-876, gnl|Mm7|chr9 (121484786-121484563) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-268, gnl|bosTau2|chr22 (7759925-7759779) | |
| 122-268, gnl|canFam2|chr23 (14866129-14866289) | |
| 122-268, gnl|danRer3|chr24 (9532298-9532145) | |
| 122-268, gnl|echTel1|scaffold_316638 (47679-47519) | |
| 122-268, gnl|fr1|chrUn (122648806-122648647) | |
| 122-268, gnl|galGal2|chr2 (1580592-1580748) | |
| 122-268, gnl|hg17|chr3 (42713492-42713652) | |
| 122-268, gnl|Hg17|chr3 (42713642-42713496) | |
| 122-268, gnl|mm7|chr9 (121488698-121488857) | |
| 122-268, gnl|Mm7|chr9 (121488848-121488702) | |
| 122-268, gnl|monDom2|scaffold_5 (77871821-77871978) | |
| 122-268, gnl|oryCun1|scaffold_213366 (53814-53984) | |
| 122-268, gnl|panTro1|chr2 (43918588-43918748) | |
| 122-268, gnl|rheMac2|chr2 (93874669-93874509) | |
| 122-268, gnl|rn3|chr8 (127170137-127169978) | |
| 122-268, gnl|tetNig1|chr6 (3105343-3105502) | |
| 122-268, gnl|xenTro1|scaffold_451 (230844-231023) | |
| 299-506, gnl|bosTau2|chr22 (14277216-14277423) | |
| 299-506, gnl|Hg17|chr3 (42710319-42710112) | |
| 299-506, gnl|Mm7|chr9 (121485802-121485595) | |
| 646-876, gnl|bosTau2|chr22 (14278147-14278378) | |
| 646-876, gnl|Hg17|chr3 (42709373-42709159) | |
| 646-876, gnl|Mm7|chr9 (121484786-121484563) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sme (0.305437) | |
| che (0.272628) | |
| ssp (0.271039) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| eru (0.120048) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| che (0.272628) | |
| ssp (0.271039) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| eru (0.120048) | |
| ldo (0.0970026) |