Non-Coding RNA Search

Ss1.1-Pig2-68D08.5

Sequence:


               
               TGAAGAGTGTTGCTAATTCTTCAACAAAATCCCCCGGCCACTGGGCCTCATGGAGGCCGC
CCAGGCAGGCCTCTATCTCCATCCGTCCCATGAGACCCTTCTCCACCAGCTCCCGGAGCA
AGAACAGCAGCAGGTCCCACTCCCTCGGCCGAGTGTCTGCCAGAAGGCCCACATTTCTTG
GGCTCAGCAGCAGCTGCAGCGGAACTGGCACCTGGAAGTCATCCTTCCACAGGGAAAGCA
GCATGAGCAGGAGCCTTCGAGCCTGCCCTCTCTCTAGCCGGTGTTGTGCCGGGGGGCCCA
GGACAGGAATTTGATCTGCAACAAGGAGGGACGCTAACTCCACAGAGCACTTTGCCAGAT
GCTGCTCAGCAGGTGGGCACAGGAACTGGCGGCACTGCAGCGTCTCGCCCAGCTGGCCTA
GGAGCCGCTCCAGATGCTCTGGGGAAACTCCCTCCTCAGGGTCCCGGGGCCCCACGGCCA
GAGAGAGCACATCCTGGAGAAAGTAGGGGTGGGAGCAGAGTAAGGCTTCAGGCCAGGCTA
TGGCCTAGGAGGCCACAGAGAATGTGCCTTGGGGTAGGGATCAGCCAGTGGAAAGAGGCG
GAAGGAAAAGGAAGACCGGGCCCTGGGGTTGAGTGACTGGGCCAAGGTGCCTTTAGACTT
GGGGCTCGGGCAGGACAGCACAGCTGGGAGAAGCAACCAAGTGGACAACAGAGGAACGAG
ATGGAGCAGGTAAGCCGAGGGACGACATACTGCCAGAGAACTCGGGAGGTGTTATTCGTC
TTGGGACAAAGACGTACACAGCTAATTCCCAGAGGGCATCTTACGCCGAAAGCATTTAGG
GGAACTGTCCTACTTTGTACATATGATATTTGCTGTCCTTTATGGTATTCTGTTCATCTT
CTCAGGAGAGCTGAGGTTTCAGTACAGAAATCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGAGTGTTGCTAATTCTTCAACAAAATCCCCCGGCCACTGGGCCTCATGGAGGCCGC
CCAGGCAGGCCTCTATCTCCATCCGTCCCATGAGACCCTTCTCCACCAGCTCCCGGAGCA
AGAACAGCAGCAGGTCCCACTCCCTCGGCCGAGTGTCTGCCAGAAGGCCCACATTTCTTG
GGCTCAGCAGCAGCTGCAGCGGAACTGGCACCTGGAAGTCATCCTTCCACAGGGAAAGCA
GCATGAGCAGGAGCCTTCGAGCCTGCCCTCTCTCTAGCCGGTGTTGTGCCGGGGGGCCCA
GGACAGGAATTTGATCTGCAACAAGGAGGGACGCTAACTCCACAGAGCACTTTGCCAGAT
GCTGCTCAGCAGGTGGGCACAGGAACTGGCGGCACTGCAGCGTCTCGCCCAGCTGGCCTA
GGAGCCGCTCCAGATGCTCTGGGGAAACTCCCTCCTCAGGGTCCCGGGGCCCCACGGCCA
GAGAGAGCACATCCTGGAGAAAGTAGGGGTGGGAGCAGAGTAAGGCTTCAGGCCAGGCTA
TGGCCTAGGAGGCCACAGAGAATGTGCCTTGGGGTAGGGATCAGCCAGTGGAAAGAGGCG
GAAGGAAAAGGAAGACCGGGCCCTGGGGTTGAGTGACTGGGCCAAGGTGCCTTTAGACTT
GGGGCTCGGGCAGGACAGCACAGCTGGGAGAAGCAACCAAGTGGACAACAGAGGAACGAG
ATGGAGCAGGTAAGCCGAGGGACGACATACTGCCAGAGAACTCGGGAGGTGTTATTCGTC
TTGGGACAAAGACGTACACAGCTAATTCCCAGAGGGCATCTTACGCCGAAAGCATTTAGG
GGAACTGTCCTACTTTGTACATATGATATTTGCTGTCCTTTATGGTATTCTGTTCATCTT
CTCAGGAGAGCTGAGGTTTCAGTACAGAAATCCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               505-624, + strand, RNAz p=0.950067

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               505-624, + strand, RNAz p=0.950067

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               140-322, gnl|bosTau2|chr26 (30162126-30161944)
               

               
               140-322, gnl|canFam2|chr30 (12650776-12650995)
               

               
               140-322, gnl|dasNov1|scaffold_6445 (52880-52661)
               

               
               140-322, gnl|echTel1|scaffold_293686 (6387-6546)
               

               
               140-322, gnl|hg17|chr15 (40804971-40805192)
               

               
               140-322, gnl|Hg17|chr15 (40804979-40805161)
               

               
               140-322, gnl|mm7|chr2 (120461265-120461480)
               

               
               140-322, gnl|Mm7|chr2 (120461273-120461455)
               

               
               140-322, gnl|monDom2|scaffold_53 (11721970-11721773)
               

               
               140-322, gnl|oryCun1|scaffold_199912 (117386-117605)
               

               
               140-322, gnl|panTro1|chr16 (40788393-40788614)
               

               
               140-322, gnl|rheMac2|chr7 (21194801-21195024)
               

               
               140-322, gnl|rn3|chr3 (107395138-107395344)
               


               
               386-758, gnl|bosTau2|chr26 (30161591-30161210)
               

               
               386-758, gnl|Hg17|chr15 (40805800-40806151)
               

               
               386-758, gnl|Mm7|chr2 (120461731-120462078)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-322, gnl|bosTau2|chr26 (30162126-30161944)
               

               
               140-322, gnl|canFam2|chr30 (12650776-12650995)
               

               
               140-322, gnl|dasNov1|scaffold_6445 (52880-52661)
               

               
               140-322, gnl|echTel1|scaffold_293686 (6387-6546)
               

               
               140-322, gnl|hg17|chr15 (40804971-40805192)
               

               
               140-322, gnl|Hg17|chr15 (40804979-40805161)
               

               
               140-322, gnl|mm7|chr2 (120461265-120461480)
               

               
               140-322, gnl|Mm7|chr2 (120461273-120461455)
               

               
               140-322, gnl|monDom2|scaffold_53 (11721970-11721773)
               

               
               140-322, gnl|oryCun1|scaffold_199912 (117386-117605)
               

               
               140-322, gnl|panTro1|chr16 (40788393-40788614)
               

               
               140-322, gnl|rheMac2|chr7 (21194801-21195024)
               

               
               140-322, gnl|rn3|chr3 (107395138-107395344)
               


               
               386-758, gnl|bosTau2|chr26 (30161591-30161210)
               

               
               386-758, gnl|Hg17|chr15 (40805800-40806151)
               

               
               386-758, gnl|Mm7|chr2 (120461731-120462078)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	140-322, gnl\|bosTau2\|chr26 (30162126-30161944)
	140-322, gnl\|canFam2\|chr30 (12650776-12650995)
	140-322, gnl\|dasNov1\|scaffold_6445 (52880-52661)
	140-322, gnl\|echTel1\|scaffold_293686 (6387-6546)
	140-322, gnl\|hg17\|chr15 (40804971-40805192)
	140-322, gnl\|Hg17\|chr15 (40804979-40805161)
	140-322, gnl\|mm7\|chr2 (120461265-120461480)
	140-322, gnl\|Mm7\|chr2 (120461273-120461455)
	140-322, gnl\|monDom2\|scaffold_53 (11721970-11721773)
	140-322, gnl\|oryCun1\|scaffold_199912 (117386-117605)
	140-322, gnl\|panTro1\|chr16 (40788393-40788614)
	140-322, gnl\|rheMac2\|chr7 (21194801-21195024)
	140-322, gnl\|rn3\|chr3 (107395138-107395344)

	386-758, gnl\|bosTau2\|chr26 (30161591-30161210)
	386-758, gnl\|Hg17\|chr15 (40805800-40806151)
	386-758, gnl\|Mm7\|chr2 (120461731-120462078)