Ss1.1-Pig2-68D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGTAGGCTGGAGGAACTGTGAGGTAAACAGCTGAGGGGGAGGAGACGGTGGTGACCA TGAAAGACACCAGGTTGACAGCACTGGAAACTCCAGTACCAGTTGTCCCCAGAACAGTCC GGTGGTGGCGCCAATGAAGAGCCTTCCGAGTCTTTAAAGCACGTCCTGGACCCAGCACGG CACATCCGTGTGAGATAATGGCCCAGCAAGCAAATATGGGGGAGCTGCTCTCCATGCTGG ACTCCCCCGTGCTGAGCGTGCGTGACGATGTAACAGCTGTCTTTAAAGAGAACCTCAGTT CCGACCGTGGTCCGATGCTTGTAAACACCTTGGTGGATTATTACCTGGAAACCAGCTCAC AGCCCGTGTTGCACATACTGACTGCCTTGCAAGAGCCACATGATAAGCACCTCTTGGACA AAATGAATGAATACATGGGCAAGGCCGCCTCTCGATTACCCACCCTGTCATTGCTGGGGC ACGTCGTGAGACTGCAGCCGTCGTGGAAGCATAAGCTCTCCCAAGCACCTCTTTTGCCTT CTTTACTAAAGTGTCTCAAGGTGGACACCGACGTCATCGTCCTCACCACCGGCGTCTTGG TGTTGATAACCATGCTTCCCATGATCCCGCAGTCGGGGAAACAGCACCTTCACGACTTCT TTGATATTTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGTAGGCTGGAGGAACTGTGAGGTAAACAGCTGAGGGGGAGGAGACGGTGGTGACCA TGAAAGACACCAGGTTGACAGCACTGGAAACTCCAGTACCAGTTGTCCCCAGAACAGTCC GGTGGTGGCGCCAATGAAGAGCCTTCCGAGTCTTTAAAGCACGTCCTGGACCCAGCACGG CACATCCGTGTGAGATAATGGCCCAGCAAGCAAATATGGGGGAGCTGCTCTCCATGCTGG ACTCCCCCGTGCTGAGCGTGCGTGACGATGTAACAGCTGTCTTTAAAGAGAACCTCAGTT CCGACCGTGGTCCGATGCTTGTAAACACCTTGGTGGATTATTACCTGGAAACCAGCTCAC AGCCCGTGTTGCACATACTGACTGCCTTGCAAGAGCCACATGATAAGCACCTCTTGGACA AAATGAATGAATACATGGGCAAGGCCGCCTCTCGATTACCCACCCTGTCATTGCTGGGGC ACGTCGTGAGACTGCAGCCGTCGTGGAAGCATAAGCTCTCCCAAGCACCTCTTTTGCCTT CTTTACTAAAGTGTCTCAAGGTGGACACCGACGTCATCGTCCTCACCACCGGCGTCTTGG TGTTGATAACCATGCTTCCCATGATCCCGCAGTCGGGGAAACAGCACCTTCACGACTTCT TTGATATTTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 154-273, - strand, RNAz p=0.891855 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 154-273, - strand, RNAz p=0.891855 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 115-301, gnl|bosTau2|chr11 (83518549-83518364) | |
| 115-301, gnl|Hg17|chr9 (132833896-132833710) | |
| 115-301, gnl|Mm7|chr2 (28665913-28666099) | |
| 399-562, gnl|bosTau2|chr11 (83513668-83513505) | |
| 399-562, gnl|canFam2|chr9 (54772196-54772038) | |
| 399-562, gnl|danRer3|chr21 (8235617-8235459) | |
| 399-562, gnl|dasNov1|scaffold_16570 (3638-3796) | |
| 399-562, gnl|fr1|chrUn (202070287-202070445) | |
| 399-562, gnl|galGal2|chr17 (3673653-3673491) | |
| 399-562, gnl|hg17|chr9 (132830526-132830684) | |
| 399-562, gnl|Hg17|chr9 (132830689-132830526) | |
| 399-562, gnl|loxAfr1|scaffold_229081 (880-1030) | |
| 399-562, gnl|mm7|chr2 (28669928-28669770) | |
| 399-562, gnl|Mm7|chr2 (28669763-28669926) | |
| 399-562, gnl|monDom2|scaffold_51 (8782297-8782455) | |
| 399-562, gnl|oryCun1|scaffold_213141 (8449-8607) | |
| 399-562, gnl|panTro1|chr11 (117707953-117708111) | |
| 399-562, gnl|rheMac2|chr15 (5708911-5708753) | |
| 399-562, gnl|rn3|chr3 (7648191-7648033) | |
| 399-562, gnl|tetNig1|chr4 (6136986-6137144) | |
| 399-562, gnl|xenTro1|scaffold_191 (1431717-1431875) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-301, gnl|bosTau2|chr11 (83518549-83518364) | |
| 115-301, gnl|Hg17|chr9 (132833896-132833710) | |
| 115-301, gnl|Mm7|chr2 (28665913-28666099) | |
| 399-562, gnl|bosTau2|chr11 (83513668-83513505) | |
| 399-562, gnl|canFam2|chr9 (54772196-54772038) | |
| 399-562, gnl|danRer3|chr21 (8235617-8235459) | |
| 399-562, gnl|dasNov1|scaffold_16570 (3638-3796) | |
| 399-562, gnl|fr1|chrUn (202070287-202070445) | |
| 399-562, gnl|galGal2|chr17 (3673653-3673491) | |
| 399-562, gnl|hg17|chr9 (132830526-132830684) | |
| 399-562, gnl|Hg17|chr9 (132830689-132830526) | |
| 399-562, gnl|loxAfr1|scaffold_229081 (880-1030) | |
| 399-562, gnl|mm7|chr2 (28669928-28669770) | |
| 399-562, gnl|Mm7|chr2 (28669763-28669926) | |
| 399-562, gnl|monDom2|scaffold_51 (8782297-8782455) | |
| 399-562, gnl|oryCun1|scaffold_213141 (8449-8607) | |
| 399-562, gnl|panTro1|chr11 (117707953-117708111) | |
| 399-562, gnl|rheMac2|chr15 (5708911-5708753) | |
| 399-562, gnl|rn3|chr3 (7648191-7648033) | |
| 399-562, gnl|tetNig1|chr4 (6136986-6137144) | |
| 399-562, gnl|xenTro1|scaffold_191 (1431717-1431875) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |