Non-Coding RNA Search

Ss1.1-Pig2-68G17.5

Sequence:


               
               CAGCCTTTCCACGGCAGGGACACAGCCCCTATTCAGAACCCTGACCCATCACCAGACCCT
GGGGTCAGCTAAGGGAAAGCATGCCTCGACCATTCGCCTTCCGACCCCCACCTGCCATCC
CCAGCCGCTGGGGGACTTGGGGACTACTGGAGACTCTCTGGGAGATGGATGAGGTGGGGG
GCCCCCACTCTTTCCCTCCTGCAGTCCCATAGCTGGGGCCTCCTTCTCAGGGTCTCCCTA
GCCCAGCCCTCCTGCCCCCAGCCCACTCGGTGCTGTTGAGTAGGGGCCCTGCCAGGAACT
GACCAACTCAGTGAGGAGCCATAGTGTGTCTATGTGCACAAGCAGGGGACAGACGGGCGC
TTGCGGGGGGTGGGGTGTGTGTGCCCAGGCATTACTCCCTAACCCCTGGGGAAGGTGAGG
CAGGGCAGGGACAGTCTCTGGGGTCAGTCCCCAGACAGGTGGTTACCTCCCCTTCCCCTC
CACTCTAAACCCTGGGGCCCTCAAATGGGGTGGGAGGGCAGGGGCAGGGGCCCTCCAAGG
GGGTTCGGGGTGGGGGATTCCTGAATGCACCATAATCGCTGTATGAATATTAAAAAGTCT
AAAGTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTTTCCACGGCAGGGACACAGCCCCTATTCAGAACCCTGACCCATCACCAGACCCT
GGGGTCAGCTAAGGGAAAGCATGCCTCGACCATTCGCCTTCCGACCCCCACCTGCCATCC
CCAGCCGCTGGGGGACTTGGGGACTACTGGAGACTCTCTGGGAGATGGATGAGGTGGGGG
GCCCCCACTCTTTCCCTCCTGCAGTCCCATAGCTGGGGCCTCCTTCTCAGGGTCTCCCTA
GCCCAGCCCTCCTGCCCCCAGCCCACTCGGTGCTGTTGAGTAGGGGCCCTGCCAGGAACT
GACCAACTCAGTGAGGAGCCATAGTGTGTCTATGTGCACAAGCAGGGGACAGACGGGCGC
TTGCGGGGGGTGGGGTGTGTGTGCCCAGGCATTACTCCCTAACCCCTGGGGAAGGTGAGG
CAGGGCAGGGACAGTCTCTGGGGTCAGTCCCCAGACAGGTGGTTACCTCCCCTTCCCCTC
CACTCTAAACCCTGGGGCCCTCAAATGGGGTGGGAGGGCAGGGGCAGGGGCCCTCCAAGG
GGGTTCGGGGTGGGGGATTCCTGAATGCACCATAATCGCTGTATGAATATTAAAAAGTCT
AAAGTGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               102-201, + strand, RNAz p=0.512667
               

               
               120-305, - strand, RNAz p=0.912495
               

               
               321-595, - strand, RNAz p=0.996809
               

               
               345-611, - strand, RNAz p=0.999415

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-201, + strand, RNAz p=0.512667
               

               
               120-305, - strand, RNAz p=0.912495
               

               
               321-595, - strand, RNAz p=0.996809
               

               
               345-611, - strand, RNAz p=0.999415

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               418-512, + strand, RNAmicro p=0.999978
               

               
               412-521, - strand, RNAmicro p=0.999283

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               418-512, + strand, RNAmicro p=0.999978
               

               
               412-521, - strand, RNAmicro p=0.999283

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-611, gnl|bosTau2|chr27 (15998061-15998660)
               

               
               1-611, gnl|canFam2|chrX (40769998-40770700)
               

               
               1-611, gnl|dasNov1|scaffold_60900 (4714-4028)
               

               
               1-611, gnl|echTel1|scaffold_277391 (41117-40432)
               

               
               1-611, gnl|hg17|chrX (46844972-46845663)
               

               
               1-611, gnl|Hg17|chrX (46845050-46845651)
               

               
               1-611, gnl|loxAfr1|scaffold_16183 (45348-44689)
               

               
               1-611, gnl|mm7|chrX (19132368-19133043)
               

               
               1-611, gnl|Mm7|chrX (19132446-19133031)
               

               
               1-611, gnl|monDom2|scaffold_134 (541534-540934)
               

               
               1-611, gnl|oryCun1|scaffold_200569 (30577-29888)
               

               
               1-611, gnl|panTro1|chrX (48426860-48427551)
               

               
               1-611, gnl|rheMac2|chrX (45061026-45061716)
               

               
               1-611, gnl|rn3|chrX (12916207-12915525)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-611, gnl|bosTau2|chr27 (15998061-15998660)
               

               
               1-611, gnl|canFam2|chrX (40769998-40770700)
               

               
               1-611, gnl|dasNov1|scaffold_60900 (4714-4028)
               

               
               1-611, gnl|echTel1|scaffold_277391 (41117-40432)
               

               
               1-611, gnl|hg17|chrX (46844972-46845663)
               

               
               1-611, gnl|Hg17|chrX (46845050-46845651)
               

               
               1-611, gnl|loxAfr1|scaffold_16183 (45348-44689)
               

               
               1-611, gnl|mm7|chrX (19132368-19133043)
               

               
               1-611, gnl|Mm7|chrX (19132446-19133031)
               

               
               1-611, gnl|monDom2|scaffold_134 (541534-540934)
               

               
               1-611, gnl|oryCun1|scaffold_200569 (30577-29888)
               

               
               1-611, gnl|panTro1|chrX (48426860-48427551)
               

               
               1-611, gnl|rheMac2|chrX (45061026-45061716)
               

               
               1-611, gnl|rn3|chrX (12916207-12915525)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               jca (0.11396)

	102-201, + strand, RNAz p=0.512667
	120-305, - strand, RNAz p=0.912495
	321-595, - strand, RNAz p=0.996809
	345-611, - strand, RNAz p=0.999415

	418-512, + strand, RNAmicro p=0.999978
	412-521, - strand, RNAmicro p=0.999283

	1-611, gnl\|bosTau2\|chr27 (15998061-15998660)
	1-611, gnl\|canFam2\|chrX (40769998-40770700)
	1-611, gnl\|dasNov1\|scaffold_60900 (4714-4028)
	1-611, gnl\|echTel1\|scaffold_277391 (41117-40432)
	1-611, gnl\|hg17\|chrX (46844972-46845663)
	1-611, gnl\|Hg17\|chrX (46845050-46845651)
	1-611, gnl\|loxAfr1\|scaffold_16183 (45348-44689)
	1-611, gnl\|mm7\|chrX (19132368-19133043)
	1-611, gnl\|Mm7\|chrX (19132446-19133031)
	1-611, gnl\|monDom2\|scaffold_134 (541534-540934)
	1-611, gnl\|oryCun1\|scaffold_200569 (30577-29888)
	1-611, gnl\|panTro1\|chrX (48426860-48427551)
	1-611, gnl\|rheMac2\|chrX (45061026-45061716)
	1-611, gnl\|rn3\|chrX (12916207-12915525)