Non-Coding RNA Search

Ss1.1-Pig2-68J18.5

Sequence:


               
               TTAAGGAGGAGCAGAGGATGTGTATCTAACCTTAACATGCCTGGAACTTGACCGTTGTAA
GCAAATTCTTCCCCTCTGCTCCCCAGATGCCCCCACCTCCATGAAGCTTGGATGTCTGTC
CAGCTTGATACCCTCCGAATTTCAGGCAGACATCCCAGAGTTCTGTCGCCCTATCTGTTC
CTAGGGCCTTTCTCTATGTCCCTCGTGGGCTCCTAACTTCAGAGGAAGCAGCTGTGTTCT
GGAGCCCAGGCACCATGCTTTGCATAAACAAGCAATTTCGTCATGACATGCATGTGTTGA
TAATCCTGAAACACTCATTGAGAGGGTCGATGCAATTGACCTAGGATGACCGATACCAAA
CAGAATTTGAAGAACAGGTGGCCAACTCCTACGGAACTCAGTCCCTCGCTCTTCTTTCAA
GAATGGAAAGTAAAATGATTTTTGGACTGATGAAATTATAAGAACAATGATGCAGTTTAT
ACAAAACAAACAGCTTTTTCTGTAACCTGCCTCCAAAGAAATAGAATTTCCTAGGGAAAC
AGTGACTCATGTATAGTTTCTCAACTTTGAGTCAGATCCTGGCCTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGGAGGAGCAGAGGATGTGTATCTAACCTTAACATGCCTGGAACTTGACCGTTGTAA
GCAAATTCTTCCCCTCTGCTCCCCAGATGCCCCCACCTCCATGAAGCTTGGATGTCTGTC
CAGCTTGATACCCTCCGAATTTCAGGCAGACATCCCAGAGTTCTGTCGCCCTATCTGTTC
CTAGGGCCTTTCTCTATGTCCCTCGTGGGCTCCTAACTTCAGAGGAAGCAGCTGTGTTCT
GGAGCCCAGGCACCATGCTTTGCATAAACAAGCAATTTCGTCATGACATGCATGTGTTGA
TAATCCTGAAACACTCATTGAGAGGGTCGATGCAATTGACCTAGGATGACCGATACCAAA
CAGAATTTGAAGAACAGGTGGCCAACTCCTACGGAACTCAGTCCCTCGCTCTTCTTTCAA
GAATGGAAAGTAAAATGATTTTTGGACTGATGAAATTATAAGAACAATGATGCAGTTTAT
ACAAAACAAACAGCTTTTTCTGTAACCTGCCTCCAAAGAAATAGAATTTCCTAGGGAAAC
AGTGACTCATGTATAGTTTCTCAACTTTGAGTCAGATCCTGGCCTTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               462-573, - strand, RNAz p=0.74302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               462-573, - strand, RNAz p=0.74302

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-586, gnl|bosTau2|chr12 (48375520-48376104)
               

               
               2-586, gnl|canFam2|chr5 (58684352-58683836)
               

               
               2-586, gnl|dasNov1|scaffold_90989 (1938-2420)
               

               
               2-586, gnl|echTel1|scaffold_287032 (17468-16980)
               

               
               2-586, gnl|hg17|chr1 (53422266-53422793)
               

               
               2-586, gnl|Hg17|chr1 (53422989-53422391)
               

               
               2-586, gnl|mm7|chr4 (107251208-107250761)
               

               
               2-586, gnl|Mm7|chr4 (107250578-107251104)
               

               
               2-586, gnl|oryCun1|scaffold_202384 (55173-54658)
               

               
               2-586, gnl|panTro1|chr1 (51667480-51668006)
               

               
               2-586, gnl|rheMac2|chr1 (56124129-56124657)
               

               
               2-586, gnl|rn3|chr5 (128981552-128981077)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-586, gnl|bosTau2|chr12 (48375520-48376104)
               

               
               2-586, gnl|canFam2|chr5 (58684352-58683836)
               

               
               2-586, gnl|dasNov1|scaffold_90989 (1938-2420)
               

               
               2-586, gnl|echTel1|scaffold_287032 (17468-16980)
               

               
               2-586, gnl|hg17|chr1 (53422266-53422793)
               

               
               2-586, gnl|Hg17|chr1 (53422989-53422391)
               

               
               2-586, gnl|mm7|chr4 (107251208-107250761)
               

               
               2-586, gnl|Mm7|chr4 (107250578-107251104)
               

               
               2-586, gnl|oryCun1|scaffold_202384 (55173-54658)
               

               
               2-586, gnl|panTro1|chr1 (51667480-51668006)
               

               
               2-586, gnl|rheMac2|chr1 (56124129-56124657)
               

               
               2-586, gnl|rn3|chr5 (128981552-128981077)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	2-586, gnl\|bosTau2\|chr12 (48375520-48376104)
	2-586, gnl\|canFam2\|chr5 (58684352-58683836)
	2-586, gnl\|dasNov1\|scaffold_90989 (1938-2420)
	2-586, gnl\|echTel1\|scaffold_287032 (17468-16980)
	2-586, gnl\|hg17\|chr1 (53422266-53422793)
	2-586, gnl\|Hg17\|chr1 (53422989-53422391)
	2-586, gnl\|mm7\|chr4 (107251208-107250761)
	2-586, gnl\|Mm7\|chr4 (107250578-107251104)
	2-586, gnl\|oryCun1\|scaffold_202384 (55173-54658)
	2-586, gnl\|panTro1\|chr1 (51667480-51668006)
	2-586, gnl\|rheMac2\|chr1 (56124129-56124657)
	2-586, gnl\|rn3\|chr5 (128981552-128981077)