Non-Coding RNA Search

Ss1.1-Pig2-68K22.5

Sequence:


               
               GCCCTATGCCCGACCACCGTCAGGGGAAACCCCTCCTAGTCCTCCGCAGGAAGGGGAAGA
GGGCCCTGGGCTGTTGAGATCTGGAGAGGCTGGCCTAGGGGGACAAGAAAGGTAGGGAGC
CCTCTTAGGGGCCATTAGCTTAGTGAGTTTACCCCGCAGGAGCCGGGGAGCGCTAGAGGT
AGTTGGGTAGAGCAGCCAGCAGGGGGCAGCGTGGGACCCATATCCCAGCCCCAGGAGGAC
CAGAGGTGGAGGGGGGCCCGAGGGCGTTAGGAGGGTGGGCGGGCCGTACCCACCCAGCCC
AGGGGAGAGTCACAGTGCCTTAGAAGTGGCAGGGGTGAGGATCAAAGAACGGGGTCCCAG
GGCTGGCAGAGAGGAGTGTTCCTGTTGAGGGGCAGCTCTGCCAGTCTTTGCTGGTCCATA
GGCGTGAGAGTTTATTTTTGTACAATGGGTGGGGGTGGGGGGCGCTGTACCCTTCTGGCC
CCTTCAGGGGCCCTGTAGACGTTGCTATTTTTGGTACGATTCCTGTCATCCCTGTCGCAG
AGTTGTGTCCCCAATAAACAGGTGTCTTGAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTATGCCCGACCACCGTCAGGGGAAACCCCTCCTAGTCCTCCGCAGGAAGGGGAAGA
GGGCCCTGGGCTGTTGAGATCTGGAGAGGCTGGCCTAGGGGGACAAGAAAGGTAGGGAGC
CCTCTTAGGGGCCATTAGCTTAGTGAGTTTACCCCGCAGGAGCCGGGGAGCGCTAGAGGT
AGTTGGGTAGAGCAGCCAGCAGGGGGCAGCGTGGGACCCATATCCCAGCCCCAGGAGGAC
CAGAGGTGGAGGGGGGCCCGAGGGCGTTAGGAGGGTGGGCGGGCCGTACCCACCCAGCCC
AGGGGAGAGTCACAGTGCCTTAGAAGTGGCAGGGGTGAGGATCAAAGAACGGGGTCCCAG
GGCTGGCAGAGAGGAGTGTTCCTGTTGAGGGGCAGCTCTGCCAGTCTTTGCTGGTCCATA
GGCGTGAGAGTTTATTTTTGTACAATGGGTGGGGGTGGGGGGCGCTGTACCCTTCTGGCC
CCTTCAGGGGCCCTGTAGACGTTGCTATTTTTGGTACGATTCCTGTCATCCCTGTCGCAG
AGTTGTGTCCCCAATAAACAGGTGTCTTGAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               81-574, - strand, RNAz p=0.94643
               

               
               201-313, - strand, RNAz p=0.847121
               

               
               354-488, - strand, RNAz p=0.994713

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-574, - strand, RNAz p=0.94643
               

               
               201-313, - strand, RNAz p=0.847121
               

               
               354-488, - strand, RNAz p=0.994713

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-574, gnl|bosTau2|chr10 (15634143-15633576)
               

               
               1-574, gnl|canFam2|chr15 (21185475-21186058)
               

               
               1-574, gnl|dasNov1|scaffold_708 (131798-132374)
               

               
               1-574, gnl|hg17|chr14 (20627905-20628489)
               

               
               1-574, gnl|Hg17|chr14 (20628649-20628080)
               

               
               1-574, gnl|mm7|chr14 (47339653-47340172)
               

               
               1-574, gnl|Mm7|chr14 (47340334-47339765)
               

               
               1-574, gnl|monDom2|scaffold_12 (29384721-29384133)
               

               
               1-574, gnl|oryCun1|scaffold_172423 (34761-34206)
               

               
               1-574, gnl|panTro1|chrUn_random (21924905-21925489)
               

               
               1-574, gnl|rheMac2|chr7 (83803587-83804171)
               

               
               1-574, gnl|rn3|chr15 (27449716-27450248)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-574, gnl|bosTau2|chr10 (15634143-15633576)
               

               
               1-574, gnl|canFam2|chr15 (21185475-21186058)
               

               
               1-574, gnl|dasNov1|scaffold_708 (131798-132374)
               

               
               1-574, gnl|hg17|chr14 (20627905-20628489)
               

               
               1-574, gnl|Hg17|chr14 (20628649-20628080)
               

               
               1-574, gnl|mm7|chr14 (47339653-47340172)
               

               
               1-574, gnl|Mm7|chr14 (47340334-47339765)
               

               
               1-574, gnl|monDom2|scaffold_12 (29384721-29384133)
               

               
               1-574, gnl|oryCun1|scaffold_172423 (34761-34206)
               

               
               1-574, gnl|panTro1|chrUn_random (21924905-21925489)
               

               
               1-574, gnl|rheMac2|chr7 (83803587-83804171)
               

               
               1-574, gnl|rn3|chr15 (27449716-27450248)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	81-574, - strand, RNAz p=0.94643
	201-313, - strand, RNAz p=0.847121
	354-488, - strand, RNAz p=0.994713

	1-574, gnl\|bosTau2\|chr10 (15634143-15633576)
	1-574, gnl\|canFam2\|chr15 (21185475-21186058)
	1-574, gnl\|dasNov1\|scaffold_708 (131798-132374)
	1-574, gnl\|hg17\|chr14 (20627905-20628489)
	1-574, gnl\|Hg17\|chr14 (20628649-20628080)
	1-574, gnl\|mm7\|chr14 (47339653-47340172)
	1-574, gnl\|Mm7\|chr14 (47340334-47339765)
	1-574, gnl\|monDom2\|scaffold_12 (29384721-29384133)
	1-574, gnl\|oryCun1\|scaffold_172423 (34761-34206)
	1-574, gnl\|panTro1\|chrUn_random (21924905-21925489)
	1-574, gnl\|rheMac2\|chr7 (83803587-83804171)
	1-574, gnl\|rn3\|chr15 (27449716-27450248)