Non-Coding RNA Search

Ss1.1-Pig2-68L02.5

Sequence:


               
               ACGGCCACTGCAACGCGGGATCTGAGCCACGTGTGTGACCTATACCACAGCTCACAGCAA
CGCTGGATCCCTGACCCACTGAGCGAGGCCAGGGATCAAATCCGCATCCTCATGGATACC
AGTCGGATTTGTTTCTGTGCCACATTGGGAACTCCGAAGGCTTTAAAAGTCAGCCCTCCT
TGCAAAAGCTTATATGGAATATCTTTAGTGCAACATTCCAGGGGTGAAGGCACAGATGCA
TTGAGCCAAGTGTCTTGTGAGAGTTGATTAGGTAGAGAAACCAGGGGGAAACTGCTAAGG
TACTCTTTCATCTGCATTTGAAAATCCAAGATTTTGCATCATTCACATCTTAAGGCCAGC
TTCTGTGATTTGAAAGCTTATGCTTGCGAGAGCATAAGCTAAACTTGTGGTGTCAGATAT
GGCATATCAAACACACACACACCCCCTCCCGTCCCCACACTCCCATGGAGAAAGGAACGC
TGCTTTCCTGGTATGAATGGCTGCTGGCCACATGGCCTGTGTAGGCTCCTTCCTGATGTG
ATGCCTGTTGATAATGCTGAAGTTCTGAGCTTGGAACATCCCTGCCTGCTTCCTGGGATG
GAGGCCCCCAAGAAATGATTCCCTCCTGCCCCTGCTCATCTTTGCTCACCTTGTTTTTTA
GTGGCTTAATCCCTCACCTCCTGGGAGATGTGGTTTTCTTGTGGGGCTGTAACCTGCTGG
CCCACTTCATCAATGCCTACCTGGTGGATGACAGCGTGAGTGACACCCCAGGGGGGCTGG
GGAACGACCAGAATCCAGGTTCCCAGTTCAGCCAGGCCCTGGCCATCCGCAGATACACCA
AATTTGTGATGGGGATCGCAGTGAGCATGCTGACCTACCCCTTCCTGCTGGTTGGTGACA
TCATGGCTGTGAACAACTGCGGGCTGCAGGCCGGGCTCCCCCCTTACTCCCCAGTGTTCA
AGTCCTGGATCCACTGCTGGAAGTACCTGAGCGTGCAGGTAAGCATGCTTCCCAGGGGCA
GAGTTTCCCCACTTTCCCGCCTCATTGATCAGGGGAAAAAAAGAGGGATGAGGAGAATGC
GTAGACTTTTGGTTTGAGGTATTTCAATTAAATTTTCACTGTATTTTAGAAAGGATTTGA
AGTAGATGGGTCTGGATTTATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCCACTGCAACGCGGGATCTGAGCCACGTGTGTGACCTATACCACAGCTCACAGCAA
CGCTGGATCCCTGACCCACTGAGCGAGGCCAGGGATCAAATCCGCATCCTCATGGATACC
AGTCGGATTTGTTTCTGTGCCACATTGGGAACTCCGAAGGCTTTAAAAGTCAGCCCTCCT
TGCAAAAGCTTATATGGAATATCTTTAGTGCAACATTCCAGGGGTGAAGGCACAGATGCA
TTGAGCCAAGTGTCTTGTGAGAGTTGATTAGGTAGAGAAACCAGGGGGAAACTGCTAAGG
TACTCTTTCATCTGCATTTGAAAATCCAAGATTTTGCATCATTCACATCTTAAGGCCAGC
TTCTGTGATTTGAAAGCTTATGCTTGCGAGAGCATAAGCTAAACTTGTGGTGTCAGATAT
GGCATATCAAACACACACACACCCCCTCCCGTCCCCACACTCCCATGGAGAAAGGAACGC
TGCTTTCCTGGTATGAATGGCTGCTGGCCACATGGCCTGTGTAGGCTCCTTCCTGATGTG
ATGCCTGTTGATAATGCTGAAGTTCTGAGCTTGGAACATCCCTGCCTGCTTCCTGGGATG
GAGGCCCCCAAGAAATGATTCCCTCCTGCCCCTGCTCATCTTTGCTCACCTTGTTTTTTA
GTGGCTTAATCCCTCACCTCCTGGGAGATGTGGTTTTCTTGTGGGGCTGTAACCTGCTGG
CCCACTTCATCAATGCCTACCTGGTGGATGACAGCGTGAGTGACACCCCAGGGGGGCTGG
GGAACGACCAGAATCCAGGTTCCCAGTTCAGCCAGGCCCTGGCCATCCGCAGATACACCA
AATTTGTGATGGGGATCGCAGTGAGCATGCTGACCTACCCCTTCCTGCTGGTTGGTGACA
TCATGGCTGTGAACAACTGCGGGCTGCAGGCCGGGCTCCCCCCTTACTCCCCAGTGTTCA
AGTCCTGGATCCACTGCTGGAAGTACCTGAGCGTGCAGGTAAGCATGCTTCCCAGGGGCA
GAGTTTCCCCACTTTCCCGCCTCATTGATCAGGGGAAAAAAAGAGGGATGAGGAGAATGC
GTAGACTTTTGGTTTGAGGTATTTCAATTAAATTTTCACTGTATTTTAGAAAGGATTTGA
AGTAGATGGGTCTGGATTTATTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34872512|ref|XP_342988.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34872512|ref|XP_342988.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               654-783, + strand, RNAz p=0.658036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               654-783, + strand, RNAz p=0.658036

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               654-1005, gnl|bosTau2|chr17 (21912192-21912538)
               

               
               654-1005, gnl|Hg17|chr6 (139013411-139013113)
               

               
               654-1005, gnl|Mm7|chr17 (27530840-27524862)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               654-1005, gnl|bosTau2|chr17 (21912192-21912538)
               

               
               654-1005, gnl|Hg17|chr6 (139013411-139013113)
               

               
               654-1005, gnl|Mm7|chr17 (27530840-27524862)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	654-1005, gnl\|bosTau2\|chr17 (21912192-21912538)
	654-1005, gnl\|Hg17\|chr6 (139013411-139013113)
	654-1005, gnl\|Mm7\|chr17 (27530840-27524862)