Non-Coding RNA Search

Ss1.1-Pig2-69A09.5

Sequence:


               
               AGGGGCTGCGAGTGGGATTCTGTTACAGGTGGTACCCAGGCCGTGCTTTGGTGAGAAAAT
TCAACAGAACACTATTCCCACAGGTTTGCCCTCCTGCAGACATGGGACGCAGAAAGTCAA
AACGGAAGCCACCCCCCAAGAAGAAGATGACAGGCACCCTAGAGACTCAGTTCACCTGCC
CCTTCTGCAACCACGAGAAGTCTTGTGACGTGAAAATGGACCGGGCCCGTAATACCGGAG
TCATCTCTTGTACGGTGTGCCTAGAGGAATTCCAGACGCCCATCACTTATCTGTCAGAAC
CAGTGGACGTGTACAGCGATTGGATAGACGCCTGTGAGGCAGCCAATCAGTAGCAACACA
GAGGACCCACCCCCTTGGCAGCCTCGCCTGCTGGGTACCAATCCAGAGACATTCAAGGGT
CGAGGGTGTGGGTCCAGGGCCTTTATAGCCCTGTGTGTATGTGTGGAATGGGTGTGGGTA
TGAGTGTGAGTGTGTGGCTGCAGATGTTGCTGTGGGGGTGTCCTCGTGGGCACAGGGTGG
ATTGAAGGGTTGCTGGGCCCCAAGGGCCTGAACTGCCTCCCTTGGTTCCAAAAGCCTTTG
ACTCTCTCCCTCCTCTGGCCCCTGGCCCCTGGCCCCCTGGCTTTGGGTCCCTGGCTCCTC
CAGGGACCTGTGTCCTGACATCCTAGGTGAGGACAAGCCCAGCAGAGGTTGCCTCAGGAC
TCTCCAGCCTCCTTACCCACCTCACCAGCACTTGTCCATTTGAACTGGACTGTCCTCCTT
CCCTGCCTTCCAAAGCCTGTGGCCTGGGATTCAAGCCACAGTCCCACAGGCCCCCTGGCA
GGGTGGCCTCTTTTCATCTTTGGTCGCTTTTGTAGAGGAGGGAGGGCCTGGGTTGGGGAT
AGCTGTCAGTCACAAGACCTTAAATAAAGCGACCAATGCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGCTGCGAGTGGGATTCTGTTACAGGTGGTACCCAGGCCGTGCTTTGGTGAGAAAAT
TCAACAGAACACTATTCCCACAGGTTTGCCCTCCTGCAGACATGGGACGCAGAAAGTCAA
AACGGAAGCCACCCCCCAAGAAGAAGATGACAGGCACCCTAGAGACTCAGTTCACCTGCC
CCTTCTGCAACCACGAGAAGTCTTGTGACGTGAAAATGGACCGGGCCCGTAATACCGGAG
TCATCTCTTGTACGGTGTGCCTAGAGGAATTCCAGACGCCCATCACTTATCTGTCAGAAC
CAGTGGACGTGTACAGCGATTGGATAGACGCCTGTGAGGCAGCCAATCAGTAGCAACACA
GAGGACCCACCCCCTTGGCAGCCTCGCCTGCTGGGTACCAATCCAGAGACATTCAAGGGT
CGAGGGTGTGGGTCCAGGGCCTTTATAGCCCTGTGTGTATGTGTGGAATGGGTGTGGGTA
TGAGTGTGAGTGTGTGGCTGCAGATGTTGCTGTGGGGGTGTCCTCGTGGGCACAGGGTGG
ATTGAAGGGTTGCTGGGCCCCAAGGGCCTGAACTGCCTCCCTTGGTTCCAAAAGCCTTTG
ACTCTCTCCCTCCTCTGGCCCCTGGCCCCTGGCCCCCTGGCTTTGGGTCCCTGGCTCCTC
CAGGGACCTGTGTCCTGACATCCTAGGTGAGGACAAGCCCAGCAGAGGTTGCCTCAGGAC
TCTCCAGCCTCCTTACCCACCTCACCAGCACTTGTCCATTTGAACTGGACTGTCCTCCTT
CCCTGCCTTCCAAAGCCTGTGGCCTGGGATTCAAGCCACAGTCCCACAGGCCCCCTGGCA
GGGTGGCCTCTTTTCATCTTTGGTCGCTTTTGTAGAGGAGGGAGGGCCTGGGTTGGGGAT
AGCTGTCAGTCACAAGACCTTAAATAAAGCGACCAATGCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q545S6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q545S6_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               77-847, - strand, RNAz p=0.847411
               

               
               479-570, - strand, RNAz p=0.607288

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-847, - strand, RNAz p=0.847411
               

               
               479-570, - strand, RNAz p=0.607288

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               77-228, gnl|bosTau2|chr7 (11390247-11390095)
               

               
               77-228, gnl|Hg17|chr19 (11526186-11526028)
               

               
               77-228, gnl|Mm7|chr9 (21993509-21993347)
               


               
               289-938, gnl|bosTau2|chr7 (11389519-11388880)
               

               
               289-938, gnl|Hg17|chr19 (11525625-11524865)
               

               
               289-938, gnl|Mm7|chr9 (21993166-21992553)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-228, gnl|bosTau2|chr7 (11390247-11390095)
               

               
               77-228, gnl|Hg17|chr19 (11526186-11526028)
               

               
               77-228, gnl|Mm7|chr9 (21993509-21993347)
               


               
               289-938, gnl|bosTau2|chr7 (11389519-11388880)
               

               
               289-938, gnl|Hg17|chr19 (11525625-11524865)
               

               
               289-938, gnl|Mm7|chr9 (21993166-21992553)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	77-847, - strand, RNAz p=0.847411
	479-570, - strand, RNAz p=0.607288

	77-228, gnl\|bosTau2\|chr7 (11390247-11390095)
	77-228, gnl\|Hg17\|chr19 (11526186-11526028)
	77-228, gnl\|Mm7\|chr9 (21993509-21993347)

	289-938, gnl\|bosTau2\|chr7 (11389519-11388880)
	289-938, gnl\|Hg17\|chr19 (11525625-11524865)
	289-938, gnl\|Mm7\|chr9 (21993166-21992553)

	nlu (0.191681)
	nco (0.161734)
	pty (0.142714)
	pla (0.133672)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)
	eje (0.0988338)