Non-Coding RNA Search

Ss1.1-Pig2-69D14.5

Sequence:


               
               GCCTCTTGAATCGGCTTAGCTTCCCTTTCAACAAAGGATCCTGCTCATGAAAGGAGACAA
AGGCTGAAATAATTCAAGAGTGAGTGCAGGCAGCAGGCGTGCACTGGGGCTCATGGCCTG
CAGTGGGGTTCACAGGGAACCCCCCAACCTTCCTGTGCTGCCGTAGTTCTGGGGGGCTCC
CTGGGTGGGGAGAGCAGGAGGGGCCAGCCTGCCTAAGGAACCAGATCCCTTCACCTGGCT
CTCCTTTTTGACCTGCTGGGACTTGGAAAGAGCTGGAAGGGCACTGACCTACAATGCTGC
CTGTTCAGTAGAGCTCCCCTTTCCTGGAAACAGGCATCCGAAGCTGGCCTGACATCACTC
TGGGAGTGATTTTTGGTGTGTGGGCTGTCAGACCCTCCAGATTCAACTCAGTTTGATGAA
AAGCTCTTAGAACGACCTCTGAGCATCCACGTGGAAGGGGTTAGTGCATCGCCGTGCCAG
AAAACAATTTGTCTCACTTTTTCTTAGTGTCGCTGCCTCACTGACCTGGGCAGAATAGAA
AAATAAAGAAAGCAAATGGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCTTGAATCGGCTTAGCTTCCCTTTCAACAAAGGATCCTGCTCATGAAAGGAGACAA
AGGCTGAAATAATTCAAGAGTGAGTGCAGGCAGCAGGCGTGCACTGGGGCTCATGGCCTG
CAGTGGGGTTCACAGGGAACCCCCCAACCTTCCTGTGCTGCCGTAGTTCTGGGGGGCTCC
CTGGGTGGGGAGAGCAGGAGGGGCCAGCCTGCCTAAGGAACCAGATCCCTTCACCTGGCT
CTCCTTTTTGACCTGCTGGGACTTGGAAAGAGCTGGAAGGGCACTGACCTACAATGCTGC
CTGTTCAGTAGAGCTCCCCTTTCCTGGAAACAGGCATCCGAAGCTGGCCTGACATCACTC
TGGGAGTGATTTTTGGTGTGTGGGCTGTCAGACCCTCCAGATTCAACTCAGTTTGATGAA
AAGCTCTTAGAACGACCTCTGAGCATCCACGTGGAAGGGGTTAGTGCATCGCCGTGCCAG
AAAACAATTTGTCTCACTTTTTCTTAGTGTCGCTGCCTCACTGACCTGGGCAGAATAGAA
AAATAAAGAAAGCAAATGGCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-277, - strand, RNAz p=0.945021

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-277, - strand, RNAz p=0.945021

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr1 (83780338-83780873)
               

               
               1-552, gnl|Hg17|chr10 (125495708-125495155)
               

               
               1-552, gnl|Mm7|chr7 (128448230-128447720)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr1 (83780338-83780873)
               

               
               1-552, gnl|Hg17|chr10 (125495708-125495155)
               

               
               1-552, gnl|Mm7|chr7 (128448230-128447720)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               cov (0.264306)
               

               
               eye (0.170503)
               

               
               nca (0.136874)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cov (0.264306)
               

               
               eye (0.170503)
               

               
               nca (0.136874)

	1-552, gnl\|bosTau2\|chr1 (83780338-83780873)
	1-552, gnl\|Hg17\|chr10 (125495708-125495155)
	1-552, gnl\|Mm7\|chr7 (128448230-128447720)