Non-Coding RNA Search

Ss1.1-Pig2-69D22.5

Sequence:


               
               CCCATCTCCCCATCCCCGTTTCCCCTTCCCTGTTTCTTCTTCCTCACCCTGGCCAGATCC
CAGGATGACAGATAGAAGCCGCTTGCTCCTGTTTGACTCCTAGCTACCCCTGTAACTTAC
ACCCTTCTTCAGGACCCTTCTCTTTCTGTGCTGCCCTGTACCTCCCTCTGCTCTCCATCC
CCCCACCCCCACCCCATGTACTCATCCACCCTCCTGACCCGGAGGGACACGAAAGTTTGA
ATGCCAGGAGCAAACTACAGGAAGTCCTGGGGACGAGGACAGGGGAGATCTGCGGCTGAG
CCTGCGGTCTCCCTCCTGCTGTCCTGTCTCCAGGCCCTTAGATGGCACATCAGGGTAGGT
GTACTGCCCGGCGGGTACCCCACCTCCAGCCCACAGTGCTCGGTTGTAATTTGTATTAAG
CTGTAATATTGATTTTTTTTTTTCCCCTGTGTGTGTGAATGTGTGAAAGTGTGTGTGTGT
GTGTGTGTAAATATATAAATAGTGAGTTTCATTAAAACGAACTCTCCCACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATCTCCCCATCCCCGTTTCCCCTTCCCTGTTTCTTCTTCCTCACCCTGGCCAGATCC
CAGGATGACAGATAGAAGCCGCTTGCTCCTGTTTGACTCCTAGCTACCCCTGTAACTTAC
ACCCTTCTTCAGGACCCTTCTCTTTCTGTGCTGCCCTGTACCTCCCTCTGCTCTCCATCC
CCCCACCCCCACCCCATGTACTCATCCACCCTCCTGACCCGGAGGGACACGAAAGTTTGA
ATGCCAGGAGCAAACTACAGGAAGTCCTGGGGACGAGGACAGGGGAGATCTGCGGCTGAG
CCTGCGGTCTCCCTCCTGCTGTCCTGTCTCCAGGCCCTTAGATGGCACATCAGGGTAGGT
GTACTGCCCGGCGGGTACCCCACCTCCAGCCCACAGTGCTCGGTTGTAATTTGTATTAAG
CTGTAATATTGATTTTTTTTTTTCCCCTGTGTGTGTGAATGTGTGAAAGTGTGTGTGTGT
GTGTGTGTAAATATATAAATAGTGAGTTTCATTAAAACGAACTCTCCCACAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               349-464, - strand, RNAz p=0.999318

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               349-464, - strand, RNAz p=0.999318

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-534, gnl|bosTau2|chr3 (4702259-4701739)
               

               
               3-534, gnl|Hg17|chr1 (157141316-157141815)
               

               
               3-534, gnl|Mm7|chr1 (172036681-172036192)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-534, gnl|bosTau2|chr3 (4702259-4701739)
               

               
               3-534, gnl|Hg17|chr1 (157141316-157141815)
               

               
               3-534, gnl|Mm7|chr1 (172036681-172036192)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	3-534, gnl\|bosTau2\|chr3 (4702259-4701739)
	3-534, gnl\|Hg17\|chr1 (157141316-157141815)
	3-534, gnl\|Mm7\|chr1 (172036681-172036192)