Non-Coding RNA Search

Ss1.1-Pig2-69L19.5

Sequence:


               
               TTTCATAATAAAGTTTATTACCTAAACTGGTGGTAAAAAATATAAAATAGGATTCTGCAC
AGCAGAAAAATAAAGCCAGAGACCCTCCCCCAACCCCTGGTTTGTGCAAAGATACTGGGT
ATATGTAAACATGAAGAGGTAGGAGGTACTGAGTTCAGGTCCTGGCCCCAGATAGTTAAG
TTAAGCTACTACCAGGGGGACAACCAGGGGGACCCAGAGGGAGCACCAAGAGGGGGCACC
CCCACAAGAGGTGGGGAGGGGTCTACGGGAGGGGTCTCCAGCCGAGGGCGGGAGGCGCCT
CGCCCCCACACTCGCTCCCTCCAACCCACATGGTTCCAAGGAAATAATAATTAATAATAG
AAAATAATAAGGCGCCCCAGTTAATGCTCCGTGCAGGGCGGGCGCGGCCGATCATATCTG
GAAGGGGAAGGAGCTCAAGTAATCGCGGAGGACGGGGTTGAGGGGGATGCGCGCCAGGTT
CTCGCGGCCCACGGTAGCCACAATGCGCTGGCGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATAATAAAGTTTATTACCTAAACTGGTGGTAAAAAATATAAAATAGGATTCTGCAC
AGCAGAAAAATAAAGCCAGAGACCCTCCCCCAACCCCTGGTTTGTGCAAAGATACTGGGT
ATATGTAAACATGAAGAGGTAGGAGGTACTGAGTTCAGGTCCTGGCCCCAGATAGTTAAG
TTAAGCTACTACCAGGGGGACAACCAGGGGGACCCAGAGGGAGCACCAAGAGGGGGCACC
CCCACAAGAGGTGGGGAGGGGTCTACGGGAGGGGTCTCCAGCCGAGGGCGGGAGGCGCCT
CGCCCCCACACTCGCTCCCTCCAACCCACATGGTTCCAAGGAAATAATAATTAATAATAG
AAAATAATAAGGCGCCCCAGTTAATGCTCCGTGCAGGGCGGGCGCGGCCGATCATATCTG
GAAGGGGAAGGAGCTCAAGTAATCGCGGAGGACGGGGTTGAGGGGGATGCGCGCCAGGTT
CTCGCGGCCCACGGTAGCCACAATGCGCTGGCGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-368, + strand, RNAz p=0.920306

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-368, + strand, RNAz p=0.920306

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr25 (10248050-10247529)
               

               
               1-516, gnl|Hg17|chr16 (11255786-11256305)
               

               
               1-516, gnl|Mm7|chr16 (10461506-10462013)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr25 (10248050-10247529)
               

               
               1-516, gnl|Hg17|chr16 (11255786-11256305)
               

               
               1-516, gnl|Mm7|chr16 (10461506-10462013)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               clu (0.358938)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

	1-516, gnl\|bosTau2\|chr25 (10248050-10247529)
	1-516, gnl\|Hg17\|chr16 (11255786-11256305)
	1-516, gnl\|Mm7\|chr16 (10461506-10462013)

	clu (0.358938)
	pla (0.133672)
	eep (0.122564)
	cly (0.120642)
	eje (0.0988338)