Non-Coding RNA Search

Ss1.1-Pig2-69M21.5

Sequence:


               
               GAATTCAGTGATTTATACAACGAGGTCTATAACTTGACCCAGGAGTTCTTCCGGCATGGT
AAACCAGTCAATGCTGAGAGTCAGAACAGTGTGGGGGTGTTCACCCGAGAGGAGGTGCGA
AACCGCATCAGGGATGACCCTGATGAGCCGGAGGCCACCAAGCGCCTGAAGCTCGCCATG
ATCCAGCAGTACCTGAAGGTGGAGAGCTGTGAGAGTAGCTCACACAGCATGGATGAGGTG
TCCCTGAGCGCCTTTGGGGAGTGGACTGAGATTCCCGGTGCCCACCACATCATCCCCTCG
GGCTTCATGCGGGTTGTGGAGCTGCTGGCAGAAGGCATCCCGGCCCACGTCATCCAGCTG
GGGAAACCTGTCCGTTGTGTTCACTGGAACCAGGCCTCAGCTCGCCCCCGGGGCCCTGAG
ATTGAGCCCCGGGGTGAGGGTGACCATAACCATGACGCTGGGGAGGGCAGCCAGGGTGGA
GAGGAGCCCCCCGGGGAGAGGCAGGACGAGGACGAGCAGTGGCCGGTGCTGGTGGAGTGC
GAAGACTGCGAGGTGATCCCCGCCGACCACGTGATCGTGACCGTGTCGCTGGGCGTGCTC
AAGAGGCAGCACGCTAGCTTCTTCCAGCCGGGCCTGCCCACCGAGAAGGTGGTGGCCATC
CACCGCCTGGGCATCGGCACCACCGACAAGATCTTTCTAGAATTTGAGGAGCCCTTCTGG
GGCCCCGAGTGCAACAGCCTGCAGTTTGTGTGGGAAGACGAGGCTGAGAGCCGCACGCTC
ACCTACCCGCCCGAGCTCTGGTACCGCAAGATCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTCAGTGATTTATACAACGAGGTCTATAACTTGACCCAGGAGTTCTTCCGGCATGGT
AAACCAGTCAATGCTGAGAGTCAGAACAGTGTGGGGGTGTTCACCCGAGAGGAGGTGCGA
AACCGCATCAGGGATGACCCTGATGAGCCGGAGGCCACCAAGCGCCTGAAGCTCGCCATG
ATCCAGCAGTACCTGAAGGTGGAGAGCTGTGAGAGTAGCTCACACAGCATGGATGAGGTG
TCCCTGAGCGCCTTTGGGGAGTGGACTGAGATTCCCGGTGCCCACCACATCATCCCCTCG
GGCTTCATGCGGGTTGTGGAGCTGCTGGCAGAAGGCATCCCGGCCCACGTCATCCAGCTG
GGGAAACCTGTCCGTTGTGTTCACTGGAACCAGGCCTCAGCTCGCCCCCGGGGCCCTGAG
ATTGAGCCCCGGGGTGAGGGTGACCATAACCATGACGCTGGGGAGGGCAGCCAGGGTGGA
GAGGAGCCCCCCGGGGAGAGGCAGGACGAGGACGAGCAGTGGCCGGTGCTGGTGGAGTGC
GAAGACTGCGAGGTGATCCCCGCCGACCACGTGATCGTGACCGTGTCGCTGGGCGTGCTC
AAGAGGCAGCACGCTAGCTTCTTCCAGCCGGGCCTGCCCACCGAGAAGGTGGTGGCCATC
CACCGCCTGGGCATCGGCACCACCGACAAGATCTTTCTAGAATTTGAGGAGCCCTTCTGG
GGCCCCGAGTGCAACAGCCTGCAGTTTGTGTGGGAAGACGAGGCTGAGAGCCGCACGCTC
ACCTACCCGCCCGAGCTCTGGTACCGCAAGATCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40353133|emb|CAD98869.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40353133|emb|CAD98869.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               197-515, - strand, RNAz p=0.985782
               

               
               636-755, + strand, RNAz p=0.531792

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-515, - strand, RNAz p=0.985782
               

               
               636-755, + strand, RNAz p=0.531792

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               197-815, gnl|bosTau2|chr13 (34991073-34990455)
               

               
               197-815, gnl|Hg17|chr20 (4110734-4111352)
               

               
               197-815, gnl|Mm7|chr2 (131261263-131261881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-815, gnl|bosTau2|chr13 (34991073-34990455)
               

               
               197-815, gnl|Hg17|chr20 (4110734-4111352)
               

               
               197-815, gnl|Mm7|chr2 (131261263-131261881)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jca (0.11396)

	197-515, - strand, RNAz p=0.985782
	636-755, + strand, RNAz p=0.531792

	197-815, gnl\|bosTau2\|chr13 (34991073-34990455)
	197-815, gnl\|Hg17\|chr20 (4110734-4111352)
	197-815, gnl\|Mm7\|chr2 (131261263-131261881)