Ss1.1-Pig2-69N15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGGTGTGGATAGCGAAGGAGAGGGTGTGAACTGCTCATTTGTCTCTCTCCTACCTGT CCCTTTTCTAGGAAGTTGTGGAATTGCTGGAAGAAGAGTTTTCAGAAAGTTAGGACTGGG CAGATAATTGAGTCCTAACCTCTGGGTATTCATCATTGCCTCCCATACCAAACTTTTTTC TTCTCCACAGTGTTCCTCCTCTCTCTTCCACTTTGCAGTCCCTGTGAAACTCAGAGCCAC TGTGCATAGGCTTCTCTGCTCGCCATCAAAGAATTTCTACCTTCCTCTTGTGGCCCCTCT CAGTTTTGCCCCCCAGTACTCAGCAAGTTTGCTTGCAACAGATGATTAGTTCTTCTTGTC TGACTTGGGGGCTCCCTGCCACAGACAGCACAGCTCTTGGCCAGCTGAACCCCATCCTTG CTTCATCTCGTTCTGCATGGGCTTCGCTCTTCCCACTCGTGGAAGGGAGGTAGCTCAGGG ACTACCAATGTGGGGTCCTCTTGAGACACTTCCACTCTGATTCAGAAACACACTTCTACC TCTTTACTGTTAACTCCTACAGATGCAGCCAGCAGTTTCCGGGCACTTCTCTGAGCAGGT GCCTCATACTGGCTTCTCCACTAGGGTTTCAGGACAAACTACCAAGGAACTGCCTCAGCC TCTTCCAAGTCCTCCCCCCACTTCCTCTTTCCATGTAGAAATCACTTTGGTTTATCATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGGTGTGGATAGCGAAGGAGAGGGTGTGAACTGCTCATTTGTCTCTCTCCTACCTGT CCCTTTTCTAGGAAGTTGTGGAATTGCTGGAAGAAGAGTTTTCAGAAAGTTAGGACTGGG CAGATAATTGAGTCCTAACCTCTGGGTATTCATCATTGCCTCCCATACCAAACTTTTTTC TTCTCCACAGTGTTCCTCCTCTCTCTTCCACTTTGCAGTCCCTGTGAAACTCAGAGCCAC TGTGCATAGGCTTCTCTGCTCGCCATCAAAGAATTTCTACCTTCCTCTTGTGGCCCCTCT CAGTTTTGCCCCCCAGTACTCAGCAAGTTTGCTTGCAACAGATGATTAGTTCTTCTTGTC TGACTTGGGGGCTCCCTGCCACAGACAGCACAGCTCTTGGCCAGCTGAACCCCATCCTTG CTTCATCTCGTTCTGCATGGGCTTCGCTCTTCCCACTCGTGGAAGGGAGGTAGCTCAGGG ACTACCAATGTGGGGTCCTCTTGAGACACTTCCACTCTGATTCAGAAACACACTTCTACC TCTTTACTGTTAACTCCTACAGATGCAGCCAGCAGTTTCCGGGCACTTCTCTGAGCAGGT GCCTCATACTGGCTTCTCCACTAGGGTTTCAGGACAAACTACCAAGGAACTGCCTCAGCC TCTTCCAAGTCCTCCCCCCACTTCCTCTTTCCATGTAGAAATCACTTTGGTTTATCATCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 199-290, - strand, RNAz p=0.806802 | |
| 449-639, - strand, RNAz p=0.878143 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 199-290, - strand, RNAz p=0.806802 | |
| 449-639, - strand, RNAz p=0.878143 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr13 (42346333-42346468) | |
| 1-138, gnl|canFam2|chr24 (24565492-24566976) | |
| 1-138, gnl|dasNov1|scaffold_24400 (12035-13542) | |
| 1-138, gnl|echTel1|scaffold_316323 (15663-17028) | |
| 1-138, gnl|hg17|chr20 (30245477-30246970) | |
| 1-138, gnl|Hg17|chr20 (30246821-30246684) | |
| 1-138, gnl|loxAfr1|scaffold_27064 (17618-16108) | |
| 1-138, gnl|mm7|chr2 (152970008-152971418) | |
| 1-138, gnl|Mm7|chr2 (152971268-152971138) | |
| 1-138, gnl|monDom2|scaffold_38 (862198-860498) | |
| 1-138, gnl|oryCun1|scaffold_191471 (18344-19777) | |
| 1-138, gnl|panTro1|chr21 (31941430-31942923) | |
| 1-138, gnl|rheMac2|chr10 (32382311-32380820) | |
| 1-138, gnl|rn3|chr3 (143485893-143487304) | |
| 145-720, gnl|bosTau2|chr13 (42346523-42347095) | |
| 145-720, gnl|canFam2|chr24 (24565492-24566976) | |
| 145-720, gnl|dasNov1|scaffold_24400 (12035-13542) | |
| 145-720, gnl|echTel1|scaffold_316323 (15663-17028) | |
| 145-720, gnl|hg17|chr20 (30245477-30246970) | |
| 145-720, gnl|Hg17|chr20 (30246675-30246099) | |
| 145-720, gnl|loxAfr1|scaffold_27064 (17618-16108) | |
| 145-720, gnl|mm7|chr2 (152970008-152971418) | |
| 145-720, gnl|Mm7|chr2 (152971127-152970572) | |
| 145-720, gnl|monDom2|scaffold_38 (862198-860498) | |
| 145-720, gnl|oryCun1|scaffold_191471 (18344-19777) | |
| 145-720, gnl|panTro1|chr21 (31941430-31942923) | |
| 145-720, gnl|rheMac2|chr10 (32382311-32380820) | |
| 145-720, gnl|rn3|chr3 (143485893-143487304) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr13 (42346333-42346468) | |
| 1-138, gnl|canFam2|chr24 (24565492-24566976) | |
| 1-138, gnl|dasNov1|scaffold_24400 (12035-13542) | |
| 1-138, gnl|echTel1|scaffold_316323 (15663-17028) | |
| 1-138, gnl|hg17|chr20 (30245477-30246970) | |
| 1-138, gnl|Hg17|chr20 (30246821-30246684) | |
| 1-138, gnl|loxAfr1|scaffold_27064 (17618-16108) | |
| 1-138, gnl|mm7|chr2 (152970008-152971418) | |
| 1-138, gnl|Mm7|chr2 (152971268-152971138) | |
| 1-138, gnl|monDom2|scaffold_38 (862198-860498) | |
| 1-138, gnl|oryCun1|scaffold_191471 (18344-19777) | |
| 1-138, gnl|panTro1|chr21 (31941430-31942923) | |
| 1-138, gnl|rheMac2|chr10 (32382311-32380820) | |
| 1-138, gnl|rn3|chr3 (143485893-143487304) | |
| 145-720, gnl|bosTau2|chr13 (42346523-42347095) | |
| 145-720, gnl|canFam2|chr24 (24565492-24566976) | |
| 145-720, gnl|dasNov1|scaffold_24400 (12035-13542) | |
| 145-720, gnl|echTel1|scaffold_316323 (15663-17028) | |
| 145-720, gnl|hg17|chr20 (30245477-30246970) | |
| 145-720, gnl|Hg17|chr20 (30246675-30246099) | |
| 145-720, gnl|loxAfr1|scaffold_27064 (17618-16108) | |
| 145-720, gnl|mm7|chr2 (152970008-152971418) | |
| 145-720, gnl|Mm7|chr2 (152971127-152970572) | |
| 145-720, gnl|monDom2|scaffold_38 (862198-860498) | |
| 145-720, gnl|oryCun1|scaffold_191471 (18344-19777) | |
| 145-720, gnl|panTro1|chr21 (31941430-31942923) | |
| 145-720, gnl|rheMac2|chr10 (32382311-32380820) | |
| 145-720, gnl|rn3|chr3 (143485893-143487304) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |