Non-Coding RNA Search

Ss1.1-Pig2-69N18.5

Sequence:


               
               CCGCCCTGGTCTCTAACTATTGGCTCAGTCTGTGGACGGATGACCCCATCGTCAACGGGA
CCCAAGAGCACACGAAAGTCCGACTGAGCGTCTACGGAGCCCTGGGCATCTCACAAGGGG
TGACGGTGTTCGCCTACTCCATGGCCGTGTCCATCGGGGGCATCTTCGCCTCCCGCCGCC
TGCACCTGGACCTGCTGCATAACGTCCTCCGGTCGCCCATGAGCTTCTTTGAGCGAACGC
CCAGCGGGAACCTGGTGAACCGCTTCTCCAAGGAGCTGGACACGGTGGACTCGATGATCC
CACAGGTCATCAAGATGTTCATGGGCTCCCTGTTCAACGTGGTGGGCGCCTGCATCATCA
TCCTGCTGGCCACCCCCGTGGCAGCCGTCATCATCCCCCCGCTGGGCCTCATTTACTTCT
TTGTCCAGAGGTTCTACGTGGCCTCCTCCCGGCAGCTGAAGCGCCTCGAGTCCGTCAGCC
GCTCCCCAGTTTATTCCCACTTCAACGAGACCTTGCTGGGGGTCAGCGTCATCCGCGCCT
TCGAGGAACAGGAGCGCTTCATCCGCCAGAGCGACCTAAAGGTGGACGAGAACCAGAAGG
CCTATTACCCCAGCATCGTGGCCAACAGGTGGCTGGCCGTACGACTGGAGTTTGTGGGCA
ATTGCATCGTCCTGTTTGCTGCCCTGTTCGCCGTAATCTCCCGGCACAACCTCAGTGCTG
GCTTGGTGGGCCTCTCAGTGTCTTACTCACTGCAGATCACCGCATACTTGAACTGGCTTG
TTCGGATGTCATCTGAAATGGAAACCAACATTGTGGCTGTGGAGAGACTAAAGGAGTATT
CAGACACCGAGAAGGAGGCTCCCTGGCGAATCCCGGAGGTGGCTCCGCCCAGCACCTGGC
CCCAGGTGGGCCGAGTGGAATTCCGGGACTACGGCCTGCGTTACCGAGACGACCTGNACC
TGGTTCTCAAGCACATCAATGTCACCATCGATGGAGGGGAAAAGGTTGGCATCGTGGGGC
GGACGGGAGCCGGGAAGTCATCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCCTGGTCTCTAACTATTGGCTCAGTCTGTGGACGGATGACCCCATCGTCAACGGGA
CCCAAGAGCACACGAAAGTCCGACTGAGCGTCTACGGAGCCCTGGGCATCTCACAAGGGG
TGACGGTGTTCGCCTACTCCATGGCCGTGTCCATCGGGGGCATCTTCGCCTCCCGCCGCC
TGCACCTGGACCTGCTGCATAACGTCCTCCGGTCGCCCATGAGCTTCTTTGAGCGAACGC
CCAGCGGGAACCTGGTGAACCGCTTCTCCAAGGAGCTGGACACGGTGGACTCGATGATCC
CACAGGTCATCAAGATGTTCATGGGCTCCCTGTTCAACGTGGTGGGCGCCTGCATCATCA
TCCTGCTGGCCACCCCCGTGGCAGCCGTCATCATCCCCCCGCTGGGCCTCATTTACTTCT
TTGTCCAGAGGTTCTACGTGGCCTCCTCCCGGCAGCTGAAGCGCCTCGAGTCCGTCAGCC
GCTCCCCAGTTTATTCCCACTTCAACGAGACCTTGCTGGGGGTCAGCGTCATCCGCGCCT
TCGAGGAACAGGAGCGCTTCATCCGCCAGAGCGACCTAAAGGTGGACGAGAACCAGAAGG
CCTATTACCCCAGCATCGTGGCCAACAGGTGGCTGGCCGTACGACTGGAGTTTGTGGGCA
ATTGCATCGTCCTGTTTGCTGCCCTGTTCGCCGTAATCTCCCGGCACAACCTCAGTGCTG
GCTTGGTGGGCCTCTCAGTGTCTTACTCACTGCAGATCACCGCATACTTGAACTGGCTTG
TTCGGATGTCATCTGAAATGGAAACCAACATTGTGGCTGTGGAGAGACTAAAGGAGTATT
CAGACACCGAGAAGGAGGCTCCCTGGCGAATCCCGGAGGTGGCTCCGCCCAGCACCTGGC
CCCAGGTGGGCCGAGTGGAATTCCGGGACTACGGCCTGCGTTACCGAGACGACCTGNACC
TGGTTCTCAAGCACATCAATGTCACCATCGATGGAGGGGAAAAGGTTGGCATCGTGGGGC
GGACGGGAGCCGGGAAGTCATCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9I8K5_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9I8K5_CHICK

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               116-428, gnl|bosTau2|chr25 (16469554-16469242)
               

               
               116-428, gnl|canFam2|chr6 (30899999-30899725)
               

               
               116-428, gnl|danRer3|chr3 (32427969-32428244)
               

               
               116-428, gnl|dasNov1|scaffold_7489 (18805-18531)
               

               
               116-428, gnl|echTel1|scaffold_184580 (4416-4167)
               

               
               116-428, gnl|fr1|chrUn (106284229-106283955)
               

               
               116-428, gnl|galGal2|chr14 (9730740-9731012)
               

               
               116-428, gnl|hg17|chr16 (16116116-16116390)
               

               
               116-428, gnl|Hg17|chr16 (16116122-16116434)
               

               
               116-428, gnl|loxAfr1|scaffold_14243 (7097-6823)
               

               
               116-428, gnl|mm7|chr16 (14007405-14007672)
               

               
               116-428, gnl|Mm7|chr16 (14007404-14007716)
               

               
               116-428, gnl|monDom2|scaffold_17 (27252058-27251803)
               

               
               116-428, gnl|oryCun1|scaffold_206345 (49000-49274)
               

               
               116-428, gnl|panTro1|chr18 (16489755-16490030)
               

               
               116-428, gnl|rheMac2|chr20 (15826499-15826773)
               

               
               116-428, gnl|tetNig1|chrUn_random (110004537-110004812)
               

               
               116-428, gnl|xenTro1|scaffold_214 (135494-135764)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-428, gnl|bosTau2|chr25 (16469554-16469242)
               

               
               116-428, gnl|canFam2|chr6 (30899999-30899725)
               

               
               116-428, gnl|danRer3|chr3 (32427969-32428244)
               

               
               116-428, gnl|dasNov1|scaffold_7489 (18805-18531)
               

               
               116-428, gnl|echTel1|scaffold_184580 (4416-4167)
               

               
               116-428, gnl|fr1|chrUn (106284229-106283955)
               

               
               116-428, gnl|galGal2|chr14 (9730740-9731012)
               

               
               116-428, gnl|hg17|chr16 (16116116-16116390)
               

               
               116-428, gnl|Hg17|chr16 (16116122-16116434)
               

               
               116-428, gnl|loxAfr1|scaffold_14243 (7097-6823)
               

               
               116-428, gnl|mm7|chr16 (14007405-14007672)
               

               
               116-428, gnl|Mm7|chr16 (14007404-14007716)
               

               
               116-428, gnl|monDom2|scaffold_17 (27252058-27251803)
               

               
               116-428, gnl|oryCun1|scaffold_206345 (49000-49274)
               

               
               116-428, gnl|panTro1|chr18 (16489755-16490030)
               

               
               116-428, gnl|rheMac2|chr20 (15826499-15826773)
               

               
               116-428, gnl|tetNig1|chrUn_random (110004537-110004812)
               

               
               116-428, gnl|xenTro1|scaffold_214 (135494-135764)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	116-428, gnl\|bosTau2\|chr25 (16469554-16469242)
	116-428, gnl\|canFam2\|chr6 (30899999-30899725)
	116-428, gnl\|danRer3\|chr3 (32427969-32428244)
	116-428, gnl\|dasNov1\|scaffold_7489 (18805-18531)
	116-428, gnl\|echTel1\|scaffold_184580 (4416-4167)
	116-428, gnl\|fr1\|chrUn (106284229-106283955)
	116-428, gnl\|galGal2\|chr14 (9730740-9731012)
	116-428, gnl\|hg17\|chr16 (16116116-16116390)
	116-428, gnl\|Hg17\|chr16 (16116122-16116434)
	116-428, gnl\|loxAfr1\|scaffold_14243 (7097-6823)
	116-428, gnl\|mm7\|chr16 (14007405-14007672)
	116-428, gnl\|Mm7\|chr16 (14007404-14007716)
	116-428, gnl\|monDom2\|scaffold_17 (27252058-27251803)
	116-428, gnl\|oryCun1\|scaffold_206345 (49000-49274)
	116-428, gnl\|panTro1\|chr18 (16489755-16490030)
	116-428, gnl\|rheMac2\|chr20 (15826499-15826773)
	116-428, gnl\|tetNig1\|chrUn_random (110004537-110004812)
	116-428, gnl\|xenTro1\|scaffold_214 (135494-135764)