Non-Coding RNA Search

Ss1.1-Pig2-6P09.5

Sequence:


               
               AGTAGCAATTATGGGAAAAAATTATGTTCAATAAGGGATTAAGAGCCTAACAGCTATTAA
TGAATATTAAGGCAGTGATTCACCAAAATTGACTCCCCACTGCAGCGAACTTCCAAACAG
AAGGCTTTTCCCCAGTCGGGGTCCAGCATGCCTTCCCCGAGTGCCTGCTAATGGGACTGA
AGCCACATGGGGTTCACTCGGGCGGGGTGTCCACACAAAGCAGCCCGCTTCCCTCCCCGG
AGCGCCTGCAGATCTGCCTCCCAGCCCGGGATGGACACTTTGCCTCCATCCACACAATGA
TCTCTCCCACGGGGAAGTGACAGAGCTGTTATTATGCACTTGGGAGGAAATTAAGGGCCG
ACTTAATTAAACTTAGGTAAGAAGATTCATTTAAGTCATCATCACCCCACCAGAAAGACC
TGGCGCTATTTTAAATGAGACAAAGACAAGCTACAATTTGAATCTTATGTTCCTGTTATT
GGTTTTTACGAGAGCATCCTGTTTTTCCAGTCTTAAAAAAAATTCTTATATTTTATATCC
GTATTAGACCAAAGCAGCAGTTTTACTTCTGGCATTAATATTTTCTATAAAAGCTTAGAA
GATACGTCCATTTATAGTGAGTAGTTTTCTGTAGAGCAAAGGATATGTNTTTGTTTTGCT
AGGAATTCAGTGGGCTAATCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGCAATTATGGGAAAAAATTATGTTCAATAAGGGATTAAGAGCCTAACAGCTATTAA
TGAATATTAAGGCAGTGATTCACCAAAATTGACTCCCCACTGCAGCGAACTTCCAAACAG
AAGGCTTTTCCCCAGTCGGGGTCCAGCATGCCTTCCCCGAGTGCCTGCTAATGGGACTGA
AGCCACATGGGGTTCACTCGGGCGGGGTGTCCACACAAAGCAGCCCGCTTCCCTCCCCGG
AGCGCCTGCAGATCTGCCTCCCAGCCCGGGATGGACACTTTGCCTCCATCCACACAATGA
TCTCTCCCACGGGGAAGTGACAGAGCTGTTATTATGCACTTGGGAGGAAATTAAGGGCCG
ACTTAATTAAACTTAGGTAAGAAGATTCATTTAAGTCATCATCACCCCACCAGAAAGACC
TGGCGCTATTTTAAATGAGACAAAGACAAGCTACAATTTGAATCTTATGTTCCTGTTATT
GGTTTTTACGAGAGCATCCTGTTTTTCCAGTCTTAAAAAAAATTCTTATATTTTATATCC
GTATTAGACCAAAGCAGCAGTTTTACTTCTGGCATTAATATTTTCTATAAAAGCTTAGAA
GATACGTCCATTTATAGTGAGTAGTTTTCTGTAGAGCAAAGGATATGTNTTTGTTTTGCT
AGGAATTCAGTGGGCTAATCCTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-348, - strand, RNAz p=0.910581

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-348, - strand, RNAz p=0.910581

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-682, gnl|bosTau2|chr21 (31123000-31122321)
               

               
               1-682, gnl|Hg17|chr2 (227696793-227696108)
               

               
               1-682, gnl|Mm7|chr1 (82661035-82660386)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-682, gnl|bosTau2|chr21 (31123000-31122321)
               

               
               1-682, gnl|Hg17|chr2 (227696793-227696108)
               

               
               1-682, gnl|Mm7|chr1 (82661035-82660386)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-682, gnl\|bosTau2\|chr21 (31123000-31122321)
	1-682, gnl\|Hg17\|chr2 (227696793-227696108)
	1-682, gnl\|Mm7\|chr1 (82661035-82660386)