Non-Coding RNA Search

Ss1.1-Pig2-70B02.5

Sequence:


               
               GCCTTGGACACTGCTGCTGGGTAGCTCAGGCTCTGCGCTGCCACTGCGCCTCTCACAACT
GGCTTCCCCCTGAGGTGCGGGTATAGGTGGCTGGAACCAAGGTCGGGACCTCACAGTGTT
TCTTCCCTTGGGCCCATGGCCACACTTACCATCCACCTGAGGCTTCACCCCCTCACACCC
ACTATGGAGGCGGTGACAGAGTAGCAGCCTGAGAACAGCCTGACTCCACTGAAGAAGAGA
GGGGGTGAGACGCCCTTAACCTTCCCTACCTCTCACTGTCATAGCCTGACCACTAGCATA
GCTGGCAGAGGCAGGAGGGAGGGTCTCCTTCCCCAAGGCTCTCTGTGGGAACACTGAACC
GGGAGGTTACCTCCCTCTGCCCACCTCCCCACTCTCACCGTGTAGACATCTGAGGAGTGA
AGATGAACCCTCCCCAGACTCCAGAATCTCTGTATCATGTGCCTTGCCTCTCCGGCCCTG
GCACAGTGGCCACCCCACAGGGGATAGGAAAGGCCACTGCTTCCCACGGGAGGGGCACGC
GGGCCCTCACTCCTCCTCACTCCCTCTCCACATTGAGGATTCTAGCAGCATGGCTGAGAC
TTGGGGATCAAAGGCCTGTGCTCCTTAATGTAGGATGCTCTAGAGTCCTCTAGAACATAG
GTCAGTGAGGGGCTCTCTTGGCCGCAATCTCCATCTTTAGGATCTGCACAGAGGAACACT
GAAGTCTTCCAGAAACCTAGAGGACCTGGACTGGATACTCAGTTTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTGGACACTGCTGCTGGGTAGCTCAGGCTCTGCGCTGCCACTGCGCCTCTCACAACT
GGCTTCCCCCTGAGGTGCGGGTATAGGTGGCTGGAACCAAGGTCGGGACCTCACAGTGTT
TCTTCCCTTGGGCCCATGGCCACACTTACCATCCACCTGAGGCTTCACCCCCTCACACCC
ACTATGGAGGCGGTGACAGAGTAGCAGCCTGAGAACAGCCTGACTCCACTGAAGAAGAGA
GGGGGTGAGACGCCCTTAACCTTCCCTACCTCTCACTGTCATAGCCTGACCACTAGCATA
GCTGGCAGAGGCAGGAGGGAGGGTCTCCTTCCCCAAGGCTCTCTGTGGGAACACTGAACC
GGGAGGTTACCTCCCTCTGCCCACCTCCCCACTCTCACCGTGTAGACATCTGAGGAGTGA
AGATGAACCCTCCCCAGACTCCAGAATCTCTGTATCATGTGCCTTGCCTCTCCGGCCCTG
GCACAGTGGCCACCCCACAGGGGATAGGAAAGGCCACTGCTTCCCACGGGAGGGGCACGC
GGGCCCTCACTCCTCCTCACTCCCTCTCCACATTGAGGATTCTAGCAGCATGGCTGAGAC
TTGGGGATCAAAGGCCTGTGCTCCTTAATGTAGGATGCTCTAGAGTCCTCTAGAACATAG
GTCAGTGAGGGGCTCTCTTGGCCGCAATCTCCATCTTTAGGATCTGCACAGAGGAACACT
GAAGTCTTCCAGAAACCTAGAGGACCTGGACTGGATACTCAGTTTAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               425-617, - strand, RNAz p=0.914042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-617, - strand, RNAz p=0.914042

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               176-432, - strand, RNAmicro p=0.99455

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               176-432, - strand, RNAmicro p=0.99455

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-768, gnl|bosTau2|chr11 (8918091-8918860)
               

               
               6-768, gnl|Hg17|chr2 (73364915-73365706)
               

               
               6-768, gnl|Mm7|chr6 (85475048-85475789)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-768, gnl|bosTau2|chr11 (8918091-8918860)
               

               
               6-768, gnl|Hg17|chr2 (73364915-73365706)
               

               
               6-768, gnl|Mm7|chr6 (85475048-85475789)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eje (0.0988338)

	6-768, gnl\|bosTau2\|chr11 (8918091-8918860)
	6-768, gnl\|Hg17\|chr2 (73364915-73365706)
	6-768, gnl\|Mm7\|chr6 (85475048-85475789)