Non-Coding RNA Search

Ss1.1-Pig2-71H07.5

Sequence:


               
               GGGGTCTCCTCTTCCCACAGCACCCCACCACTACCACTCTGCTCATACATACAAGTTCTT
GGCTTGGCCAAAGCAAGTCCAGGCTCCAGAACGGCCCCAGAGGGGTCTGCAGTCAGCCAC
TGCACCTTAAAAGGCAATGTTGGCATCACGGGGTGGACGCCTCCAGATACTGCCCACCAG
GTCCCCAGAAGGACGAACCTGGCAACCTGCTGCTCCTGCTCCTTCCTCAGCGGCCACTTC
ACCTTCTCTGCTGAGCCCCCAACTCTAGACTCAGAGGCCCCCAGGCTGAGGCAGCCCACA
AGCTGCTTTACAAAAGATCATCTCCCTCCCTCACGGGAAAAGCACAGCAGGGATGAGTGG
AAAGAATGTACCTATAGATATGTACATACCACAGTGCTGTAATTTTGTATGTAGCAATCA
TGTAAATACATGTATGGATTTTATAATATACATATTATATATGAATCTATAAAGGCATAT
TTTTAGAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTCTCCTCTTCCCACAGCACCCCACCACTACCACTCTGCTCATACATACAAGTTCTT
GGCTTGGCCAAAGCAAGTCCAGGCTCCAGAACGGCCCCAGAGGGGTCTGCAGTCAGCCAC
TGCACCTTAAAAGGCAATGTTGGCATCACGGGGTGGACGCCTCCAGATACTGCCCACCAG
GTCCCCAGAAGGACGAACCTGGCAACCTGCTGCTCCTGCTCCTTCCTCAGCGGCCACTTC
ACCTTCTCTGCTGAGCCCCCAACTCTAGACTCAGAGGCCCCCAGGCTGAGGCAGCCCACA
AGCTGCTTTACAAAAGATCATCTCCCTCCCTCACGGGAAAAGCACAGCAGGGATGAGTGG
AAAGAATGTACCTATAGATATGTACATACCACAGTGCTGTAATTTTGTATGTAGCAATCA
TGTAAATACATGTATGGATTTTATAATATACATATTATATATGAATCTATAAAGGCATAT
TTTTAGAAAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               131-269, - strand, RNAz p=0.815775

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-269, - strand, RNAz p=0.815775

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               52-492, gnl|bosTau2|chr17 (38547089-38546644)
               

               
               52-492, gnl|Hg17|chr12 (118994516-118994959)
               

               
               52-492, gnl|Mm7|chr5 (114870593-114870155)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-492, gnl|bosTau2|chr17 (38547089-38546644)
               

               
               52-492, gnl|Hg17|chr12 (118994516-118994959)
               

               
               52-492, gnl|Mm7|chr5 (114870593-114870155)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	52-492, gnl\|bosTau2\|chr17 (38547089-38546644)
	52-492, gnl\|Hg17\|chr12 (118994516-118994959)
	52-492, gnl\|Mm7\|chr5 (114870593-114870155)