Non-Coding RNA Search

Ss1.1-Pig2-71H22.5

Sequence:


               
               GCAGGACCTAAGGAAGAAGATTTTGGATGTTGGGAAAAGGCTAGAGGTGACGGGATTTTG
CATGACCGGAAAGCCTGGTATAATCTGCGTGGAGGGCTTCAAAGAGCACTGCGAGGAGTT
CTGGCACACAATTAGATACCCCAACTGGAAACACATCTCCTGTAAGCACGCTGAGAGCAT
GGAGACAGAGGGTAACGGGGAGGAGCTGCGCCTTTTCCATTCTTTTGAAGAATTACTCCT
CGAGGCTCATGGGGACTATGGACTAAGGAATGACTATCACATGAATCTGGGCCAGTTCTT
AGAATTTCTCAAGAAACACAAAAGCGAGCATGTTTTCCAAATATTATTTGGGATTGAAAG
CAAAAGTTCAGACTCCTAGGAAGCCATTCAGAGGCCTATGCTTGTAATCTCACCAAGTGA
GTATTTCTGTTAAGAAGACCAAAATTAAAGGACCAGTGGCCCTGTAGCATCAGCTGTGGG
AAACCTCGCTTCAGCATTTTTCCCTGGTAATGAAACACATAGGCCTTTTAGCTTTATAAC
AGTGCAGTTGTGATGTTACTTCTGTGTCCTCATGTGAACTGAAAACTGTTTAACTGTTAA
GTAATAAAAGCCAGTCAGTTTAACCACTGAAGCTGATTGATTACAAAGGAATCCAAAGCC
CGGTTCAATGGCAGGAGTCAGACTGCCACTCTCAGCTCAAATACGAATAACATTTCTCCT
TTCTCTGATGCCGGCCTGCAGATGACACCCCCACATCTTCTTTCATTTTCGGAGAAGGAT
TCTCAAGTTTAAAATGAGAACAAAGAGCGAGCACATGTTTATTACCTTTCTTCCTTTAAC
TTAAACCCCCTATTTTATTTTTCTCTTTTCTTTTAGTAAAAGCAGATCTTAACTGTGAGG
AATGGAGAGCCATGAAGTCACAGGAATAAGACAGGGATACCATGTCGTGTGTTATTTACA
TCAGTTGATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGACCTAAGGAAGAAGATTTTGGATGTTGGGAAAAGGCTAGAGGTGACGGGATTTTG
CATGACCGGAAAGCCTGGTATAATCTGCGTGGAGGGCTTCAAAGAGCACTGCGAGGAGTT
CTGGCACACAATTAGATACCCCAACTGGAAACACATCTCCTGTAAGCACGCTGAGAGCAT
GGAGACAGAGGGTAACGGGGAGGAGCTGCGCCTTTTCCATTCTTTTGAAGAATTACTCCT
CGAGGCTCATGGGGACTATGGACTAAGGAATGACTATCACATGAATCTGGGCCAGTTCTT
AGAATTTCTCAAGAAACACAAAAGCGAGCATGTTTTCCAAATATTATTTGGGATTGAAAG
CAAAAGTTCAGACTCCTAGGAAGCCATTCAGAGGCCTATGCTTGTAATCTCACCAAGTGA
GTATTTCTGTTAAGAAGACCAAAATTAAAGGACCAGTGGCCCTGTAGCATCAGCTGTGGG
AAACCTCGCTTCAGCATTTTTCCCTGGTAATGAAACACATAGGCCTTTTAGCTTTATAAC
AGTGCAGTTGTGATGTTACTTCTGTGTCCTCATGTGAACTGAAAACTGTTTAACTGTTAA
GTAATAAAAGCCAGTCAGTTTAACCACTGAAGCTGATTGATTACAAAGGAATCCAAAGCC
CGGTTCAATGGCAGGAGTCAGACTGCCACTCTCAGCTCAAATACGAATAACATTTCTCCT
TTCTCTGATGCCGGCCTGCAGATGACACCCCCACATCTTCTTTCATTTTCGGAGAAGGAT
TCTCAAGTTTAAAATGAGAACAAAGAGCGAGCACATGTTTATTACCTTTCTTCCTTTAAC
TTAAACCCCCTATTTTATTTTTCTCTTTTCTTTTAGTAAAAGCAGATCTTAACTGTGAGG
AATGGAGAGCCATGAAGTCACAGGAATAAGACAGGGATACCATGTCGTGTGTTATTTACA
TCAGTTGATTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               320-417, + strand, RNAz p=0.875869

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-417, + strand, RNAz p=0.875869

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_033411, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_033411, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-759, gnl|bosTau2|chr9 (10103303-10104088)
               

               
               1-759, gnl|Hg17|chr6 (83962332-83963113)
               


               
               207-623, gnl|bosTau2|chr3 (9843954-9844369)
               

               
               207-623, gnl|Hg17|chr6 (83962538-83962975)
               

               
               207-623, gnl|Mm7|chr9 (86677834-86678249)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-759, gnl|bosTau2|chr9 (10103303-10104088)
               

               
               1-759, gnl|Hg17|chr6 (83962332-83963113)
               


               
               207-623, gnl|bosTau2|chr3 (9843954-9844369)
               

               
               207-623, gnl|Hg17|chr6 (83962538-83962975)
               

               
               207-623, gnl|Mm7|chr9 (86677834-86678249)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-759, gnl\|bosTau2\|chr9 (10103303-10104088)
	1-759, gnl\|Hg17\|chr6 (83962332-83963113)

	207-623, gnl\|bosTau2\|chr3 (9843954-9844369)
	207-623, gnl\|Hg17\|chr6 (83962538-83962975)
	207-623, gnl\|Mm7\|chr9 (86677834-86678249)