Non-Coding RNA Search

Ss1.1-Pig2-71J21.5

Sequence:


               
               CCACGCGTGCGGGGAAACGAGACCAGCGCCCGGGGGGAGGGGTGGGGGGGCCTTAAACAG
ACAACGTGCAGGGACCCGGGGTCATTTTGGGGGGACTGGACACCACGACGTTGAGTCTAT
GAACTGTCCCGGCATGGCTCCCCCTCCCTCCTCCCCCACCATGTTGCACCCCTGGCGATG
GAAGAAGATCTAGCTTGGGGGCCTCTCAGGCTGGGCCGGGAAGGAACTTTCCAGAAAGCC
TGGGATGGGGGGAGGAGTCTTGGGGACAGCCGTTGCCTGCAACAGAGGGCTGCCTGTGGA
CTCTTCCCTGCATGGCTGAGGCCCTGTGAGGGGGGCCCTTGAGCAACCCAGAAGCACAAA
TTGGTGGTTTGGGGCCATGCCCAACGGGGTTGGCATCCAGGAGCCTGAAGAGCTGGCTAT
GGCAGCACCCCCGCCTCGGCCCCACCACCCTCCCAAAGTCCCCGCCCTTCTTCCCTAACA
GGCCCCTCCCCCGCCTGCCCTCGGCCTCTGCTCAGGGCCAGTCCCTGATCAGACCCTGCT
GGCATGCCCTCTCCTGGGAGCCTGGTTCTTGGAGCACAGCCTTACCCACTCCACGCCCGC
CCGCCGTTTCTCCTGGTGCACCCTCCCCCACATCCAGCCACCCCTGCAACCTGGGCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTGCGGGGAAACGAGACCAGCGCCCGGGGGGAGGGGTGGGGGGGCCTTAAACAG
ACAACGTGCAGGGACCCGGGGTCATTTTGGGGGGACTGGACACCACGACGTTGAGTCTAT
GAACTGTCCCGGCATGGCTCCCCCTCCCTCCTCCCCCACCATGTTGCACCCCTGGCGATG
GAAGAAGATCTAGCTTGGGGGCCTCTCAGGCTGGGCCGGGAAGGAACTTTCCAGAAAGCC
TGGGATGGGGGGAGGAGTCTTGGGGACAGCCGTTGCCTGCAACAGAGGGCTGCCTGTGGA
CTCTTCCCTGCATGGCTGAGGCCCTGTGAGGGGGGCCCTTGAGCAACCCAGAAGCACAAA
TTGGTGGTTTGGGGCCATGCCCAACGGGGTTGGCATCCAGGAGCCTGAAGAGCTGGCTAT
GGCAGCACCCCCGCCTCGGCCCCACCACCCTCCCAAAGTCCCCGCCCTTCTTCCCTAACA
GGCCCCTCCCCCGCCTGCCCTCGGCCTCTGCTCAGGGCCAGTCCCTGATCAGACCCTGCT
GGCATGCCCTCTCCTGGGAGCCTGGTTCTTGGAGCACAGCCTTACCCACTCCACGCCCGC
CCGCCGTTTCTCCTGGTGCACCCTCCCCCACATCCAGCCACCCCTGCAACCTGGGCTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-487, - strand, RNAz p=0.795782

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-487, - strand, RNAz p=0.795782

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-487, gnl|bosTau2|chr29 (37220226-37219737)
               

               
               12-487, gnl|Hg17|chr11 (65819786-65820234)
               

               
               12-487, gnl|Mm7|chr19 (4976487-4976051)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-487, gnl|bosTau2|chr29 (37220226-37219737)
               

               
               12-487, gnl|Hg17|chr11 (65819786-65820234)
               

               
               12-487, gnl|Mm7|chr19 (4976487-4976051)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	12-487, gnl\|bosTau2\|chr29 (37220226-37219737)
	12-487, gnl\|Hg17\|chr11 (65819786-65820234)
	12-487, gnl\|Mm7\|chr19 (4976487-4976051)