Non-Coding RNA Search

Ss1.1-Pig2-71K22.5

Sequence:


               
               ATCTTGGAACTGGAGGAACTCCTGAGGGCAGGCAAGGTTTCTTCCAGCCACGTGGACGAA
GTTTGGCCCAACCTTTACATAGGAGATGCGGCCACAGCAAATAACCGCTTTGAGCTATGG
TCTTCATGAACCCTGGGCCCAAACCTGCCTCCTCATCTCTCTTGGCACCTGTACCCACTT
GACCTTACGCTGACACACAAAGCAGAAGCAGGTTTAGCTGGCAGCTCTTGCCTCTGCCCT
GATGAGTCCCAACCAATCTGAGCCTTGGTTTATCTGCCTGTAACATGGAGTTCATCTCTT
CCCCCAGAGCTGGTCCTTAGTCCCCGCCACGGGGCTCTGCTGCTTTGCCACCCTGGCTCT
GGCCCTGCTTGTGCTGAGGGAGGCTCTGGCCCAGGTGGAAACTCAGAAGATGGTAAGAGC
CCAGTGTGGGGTCCGCCTTAGAGCCTGCAACTCCATCCGCTTCCTCCTGTTGCCTGCGGT
CCCGCTCAGCCACTGTCTCCAGTTCTCACAGAAACAGCATCAAGTGTGCAGAGACAGGCG
GCTGGAAGCCGGGAGCACAAAGTGCCCGTCAGAGAAGACCACGGCCCAGGCCAGATACCC
TTGCAGGATGGACTCACTGGAGAAGCAGGACCTCCGGAGGCCCAAGATCCATAGGGCAGT
CCGGGTGTCCCCCTACCAGCCGCCCACACTGGCCTCGCTGCAGCGCCTGCTATGGGTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTGGAACTGGAGGAACTCCTGAGGGCAGGCAAGGTTTCTTCCAGCCACGTGGACGAA
GTTTGGCCCAACCTTTACATAGGAGATGCGGCCACAGCAAATAACCGCTTTGAGCTATGG
TCTTCATGAACCCTGGGCCCAAACCTGCCTCCTCATCTCTCTTGGCACCTGTACCCACTT
GACCTTACGCTGACACACAAAGCAGAAGCAGGTTTAGCTGGCAGCTCTTGCCTCTGCCCT
GATGAGTCCCAACCAATCTGAGCCTTGGTTTATCTGCCTGTAACATGGAGTTCATCTCTT
CCCCCAGAGCTGGTCCTTAGTCCCCGCCACGGGGCTCTGCTGCTTTGCCACCCTGGCTCT
GGCCCTGCTTGTGCTGAGGGAGGCTCTGGCCCAGGTGGAAACTCAGAAGATGGTAAGAGC
CCAGTGTGGGGTCCGCCTTAGAGCCTGCAACTCCATCCGCTTCCTCCTGTTGCCTGCGGT
CCCGCTCAGCCACTGTCTCCAGTTCTCACAGAAACAGCATCAAGTGTGCAGAGACAGGCG
GCTGGAAGCCGGGAGCACAAAGTGCCCGTCAGAGAAGACCACGGCCCAGGCCAGATACCC
TTGCAGGATGGACTCACTGGAGAAGCAGGACCTCCGGAGGCCCAAGATCCATAGGGCAGT
CCGGGTGTCCCCCTACCAGCCGCCCACACTGGCCTCGCTGCAGCGCCTGCTATGGGTCCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56117826|ref|NP_001007276.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56117826|ref|NP_001007276.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               605-720, - strand, RNAz p=0.643643

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               605-720, - strand, RNAz p=0.643643

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               121-511, gnl|bosTau2|chr28 (24031760-24032142)
               

               
               121-511, gnl|Hg17|chr10 (76534049-76533658)
               

               
               121-511, gnl|Mm7|chr14 (19403804-19403421)
               


               
               605-720, gnl|bosTau2|chr28 (24036962-24037077)
               

               
               605-720, gnl|Hg17|chr10 (76527651-76527536)
               

               
               605-720, gnl|Mm7|chr14 (19398952-19398837)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-511, gnl|bosTau2|chr28 (24031760-24032142)
               

               
               121-511, gnl|Hg17|chr10 (76534049-76533658)
               

               
               121-511, gnl|Mm7|chr14 (19403804-19403421)
               


               
               605-720, gnl|bosTau2|chr28 (24036962-24037077)
               

               
               605-720, gnl|Hg17|chr10 (76527651-76527536)
               

               
               605-720, gnl|Mm7|chr14 (19398952-19398837)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nep (0.183925)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	121-511, gnl\|bosTau2\|chr28 (24031760-24032142)
	121-511, gnl\|Hg17\|chr10 (76534049-76533658)
	121-511, gnl\|Mm7\|chr14 (19403804-19403421)

	605-720, gnl\|bosTau2\|chr28 (24036962-24037077)
	605-720, gnl\|Hg17\|chr10 (76527651-76527536)
	605-720, gnl\|Mm7\|chr14 (19398952-19398837)