Non-Coding RNA Search

Ss1.1-Pig2-71N05.5

Sequence:


               
               GAGAAATTGGTAAAAGCTGAAAGAAAATTTATTGATGACAGAGTACAAAAAATAATAGAC
CTAAAAGACAAAGTCTGTGCTCAGTCCAATAAAGGATTTGTTGTCATTAATCAAAAGGGA
ATTGATCCATTTTCCTTAGATGCTCTTGCAAAACATGGCATAGTAGCTCTTCGCAGAGCA
AAAAGAAGAAACATGGAAAGACTTTCTCTTGCTTGTGGTGGAGTGGCTGTGAATTCTCTT
GAAGATCTCAGTATAGATTGCTTGGGACATGCCGGTCTTGTACATGAGTGTACATTAGGT
GAGGAAAAGTTCACTTTTATTGAGGACTGTGTTAACCCTCGCTCTGTCACCTTGTTGGTT
AAGGGACCAAATAAGCATACTCTCACACAAATCAAGGATGCCGTAAGAGATGGACTTCGT
GCCATCAAAAATGCCATTGAAGATGGTTGTGTGGTTCCAGGAGCAGGTGCAGTTGAAGTA
GCAATAGCTGAAGCTCTAGCTGCATACAAGCACAGTATAAAAGGAAGAGCTCGTCTTGGG
GTCCAGGCTTTTGCTGATGCTTTACTTATTATTCCTAAGGTTCTTGCTCAGAATTCTGGT
TATGACCTGCAGGAAACACTAGTAAAAGTTCAGACTGAGCATTCAGAATCAAAACAACTT
GTTGGTATTGATTTGAATACAGGTGAGCCAATGGTAGCCGCAGATGCAGGAGTTTGGGAT
AATTACTGTGTGAAAAAACAACTTCTTCACTCTTGCACAGTGATTGCCACCAACATTCTC
CTGGTTGACGAAATTATGCGAGCTGGTATGTCTTCTTTCAAAGGGTGATTGAATTCAAAA
TCAACTCTTCTAGAAGCTGAGACTTAGCATATCTAACATCCAATTCCCATTATAGAGCCT
GAGCCAGTCTTAATTTTTACACAATAAATGCAGATTATATTTGTTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAATTGGTAAAAGCTGAAAGAAAATTTATTGATGACAGAGTACAAAAAATAATAGAC
CTAAAAGACAAAGTCTGTGCTCAGTCCAATAAAGGATTTGTTGTCATTAATCAAAAGGGA
ATTGATCCATTTTCCTTAGATGCTCTTGCAAAACATGGCATAGTAGCTCTTCGCAGAGCA
AAAAGAAGAAACATGGAAAGACTTTCTCTTGCTTGTGGTGGAGTGGCTGTGAATTCTCTT
GAAGATCTCAGTATAGATTGCTTGGGACATGCCGGTCTTGTACATGAGTGTACATTAGGT
GAGGAAAAGTTCACTTTTATTGAGGACTGTGTTAACCCTCGCTCTGTCACCTTGTTGGTT
AAGGGACCAAATAAGCATACTCTCACACAAATCAAGGATGCCGTAAGAGATGGACTTCGT
GCCATCAAAAATGCCATTGAAGATGGTTGTGTGGTTCCAGGAGCAGGTGCAGTTGAAGTA
GCAATAGCTGAAGCTCTAGCTGCATACAAGCACAGTATAAAAGGAAGAGCTCGTCTTGGG
GTCCAGGCTTTTGCTGATGCTTTACTTATTATTCCTAAGGTTCTTGCTCAGAATTCTGGT
TATGACCTGCAGGAAACACTAGTAAAAGTTCAGACTGAGCATTCAGAATCAAAACAACTT
GTTGGTATTGATTTGAATACAGGTGAGCCAATGGTAGCCGCAGATGCAGGAGTTTGGGAT
AATTACTGTGTGAAAAAACAACTTCTTCACTCTTGCACAGTGATTGCCACCAACATTCTC
CTGGTTGACGAAATTATGCGAGCTGGTATGTCTTCTTTCAAAGGGTGATTGAATTCAAAA
TCAACTCTTCTAGAAGCTGAGACTTAGCATATCTAACATCCAATTCCCATTATAGAGCCT
GAGCCAGTCTTAATTTTTACACAATAAATGCAGATTATATTTGTTGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5BJY2_RAT

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5BJY2_RAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               560-679, + strand, RNAz p=0.941595

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               560-679, + strand, RNAz p=0.941595

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-833, gnl|bosTau2|chr12 (32165437-32164613)
               

               
               1-833, gnl|Hg17|chr5 (14693357-14692526)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-833, gnl|bosTau2|chr12 (32165437-32164613)
               

               
               1-833, gnl|Hg17|chr5 (14693357-14692526)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.58548)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)

	1-833, gnl\|bosTau2\|chr12 (32165437-32164613)
	1-833, gnl\|Hg17\|chr5 (14693357-14692526)