Ss1.1-Pig2-72G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTACCAGGCGGGCGAGTCTCTGCGCTTCTTCTGCTATGAGGGCTTTGAGCTCATTGGC GAGGTCACCATCACCTGTGTGCCCGGCCACCCCTCGCAGTGGACCAGCCAGCCCCCACTC TGCAAAGTGGCCTATGAGGAGCTCCTGGACAACCGAAAACTGGAAGTGACCCAGACCACC GACCCGTCGCGGCAGCTGGAAGGGGGCAACCTCGCCTTGGCCATTCTGCTGCCCCTGGGC TTGGTCATCGTCCTGGGCAGTGGCGTTTACATTTACTACACCAAGCTACAGGGAAAATCC CTCTTCGGCTTCTCCGGTTCCCATTCCTACAGCCCTATCACGGTGGAGTCAGACTTCAGC AATCCGCTGTATGAAGCTGGGGATACACGGGAGTATGAAGTTTCCATCTGAACCCCAAGA CTAAGGCTGCAGGACCCAGGACGCCCCTCCTCTCCTCATTCTGAGCAGGGAGGAGTAGGA CCTGGTCTCTGGCTCCCTTCCTCCCTGCTGTGTAAATAGTCTCCTGGTCCCACAGGGGGG CTTTGATGGCCCTGGGGACCCTACCATAAATAAACCAGCAACCTGTGCCCAAAGCCTCCT CTTCTCAGTTGCCAAACAAGGGGCCTGCCCGCCCCCCCAACCTGCTTTTGGACCCTGGGA GGGGAACTCAGCCCCCGCTGTAACTGCTGGGCCCCTCCAGCCCAGGGCTTTCTCTAAGGA CTGCTCCAGAGCTTGGCTGTTCCCTGGGCCAGCAAGGCTCTGCCCTGCCCGGATGCTCTG CCCAGGGCCTAACCTCTGACCCTTGGAGGGTCAGAAGAAGAGGGATGAATGGGAGAGCTG GGACAAGGCCCCCGTCCCCTTCCTGCCTTCTCCTCGACCCGCAATCTCCCCATCTTTGCT TCTGGATTTTTGTTTTTGAGCAATAAACAGAAAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTACCAGGCGGGCGAGTCTCTGCGCTTCTTCTGCTATGAGGGCTTTGAGCTCATTGGC GAGGTCACCATCACCTGTGTGCCCGGCCACCCCTCGCAGTGGACCAGCCAGCCCCCACTC TGCAAAGTGGCCTATGAGGAGCTCCTGGACAACCGAAAACTGGAAGTGACCCAGACCACC GACCCGTCGCGGCAGCTGGAAGGGGGCAACCTCGCCTTGGCCATTCTGCTGCCCCTGGGC TTGGTCATCGTCCTGGGCAGTGGCGTTTACATTTACTACACCAAGCTACAGGGAAAATCC CTCTTCGGCTTCTCCGGTTCCCATTCCTACAGCCCTATCACGGTGGAGTCAGACTTCAGC AATCCGCTGTATGAAGCTGGGGATACACGGGAGTATGAAGTTTCCATCTGAACCCCAAGA CTAAGGCTGCAGGACCCAGGACGCCCCTCCTCTCCTCATTCTGAGCAGGGAGGAGTAGGA CCTGGTCTCTGGCTCCCTTCCTCCCTGCTGTGTAAATAGTCTCCTGGTCCCACAGGGGGG CTTTGATGGCCCTGGGGACCCTACCATAAATAAACCAGCAACCTGTGCCCAAAGCCTCCT CTTCTCAGTTGCCAAACAAGGGGCCTGCCCGCCCCCCCAACCTGCTTTTGGACCCTGGGA GGGGAACTCAGCCCCCGCTGTAACTGCTGGGCCCCTCCAGCCCAGGGCTTTCTCTAAGGA CTGCTCCAGAGCTTGGCTGTTCCCTGGGCCAGCAAGGCTCTGCCCTGCCCGGATGCTCTG CCCAGGGCCTAACCTCTGACCCTTGGAGGGTCAGAAGAAGAGGGATGAATGGGAGAGCTG GGACAAGGCCCCCGTCCCCTTCCTGCCTTCTCCTCGACCCGCAATCTCCCCATCTTTGCT TCTGGATTTTTGTTTTTGAGCAATAAACAGAAAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-133, - strand, RNAz p=0.947444 | |
| 16-133, - strand, RNAz p=0.608831 | |
| 457-566, - strand, RNAz p=0.703672 | |
| 723-840, - strand, RNAz p=0.818291 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-133, - strand, RNAz p=0.947444 | |
| 16-133, - strand, RNAz p=0.608831 | |
| 457-566, - strand, RNAz p=0.703672 | |
| 723-840, - strand, RNAz p=0.818291 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-133, gnl|bosTau2|chr25 (24594353-24594221) | |
| 1-133, gnl|canFam2|chr6 (20935845-20935932) | |
| 1-133, gnl|danRer3|chr3 (8166321-8166408) | |
| 1-133, gnl|dasNov1|scaffold_17926 (17806-17888) | |
| 1-133, gnl|echTel1|scaffold_312693 (4187-4274) | |
| 1-133, gnl|fr1|chrUn (165435534-165435453) | |
| 1-133, gnl|galGal2|chr15 (7090890-7090806) | |
| 1-133, gnl|hg17|chr16 (29792055-29792142) | |
| 1-133, gnl|Hg17|chr16 (29792188-29792056) | |
| 1-133, gnl|loxAfr1|scaffold_187796 (517-430) | |
| 1-133, gnl|mm7|chr7 (123063772-123063685) | |
| 1-133, gnl|Mm7|chr7 (123063637-123063769) | |
| 1-133, gnl|monDom2|scaffold_5 (119834145-119834060) | |
| 1-133, gnl|oryCun1|scaffold_192408 (8337-8255) | |
| 1-133, gnl|panTro1|chr18 (30551072-30551159) | |
| 1-133, gnl|rheMac2|chr20 (27825623-27825710) | |
| 1-133, gnl|rn3|chr1 (186294302-186294215) | |
| 1-133, gnl|tetNig1|chrUn_random (40443193-40443274) | |
| 1-133, gnl|xenTro1|scaffold_805 (54774-54856) | |
| 165-285, gnl|bosTau2|chr25 (24593543-24593423) | |
| 165-285, gnl|canFam2|chr6 (20934987-20935132) | |
| 165-285, gnl|danRer3|chr3 (8165869-8166001) | |
| 165-285, gnl|dasNov1|scaffold_17926 (17034-17184) | |
| 165-285, gnl|echTel1|scaffold_312693 (3368-3517) | |
| 165-285, gnl|fr1|chrUn (165436040-165435902) | |
| 165-285, gnl|galGal2|chr15 (7091846-7091693) | |
| 165-285, gnl|hg17|chr16 (29791212-29791358) | |
| 165-285, gnl|Hg17|chr16 (29791350-29791230) | |
| 165-285, gnl|loxAfr1|scaffold_187796 (1354-1204) | |
| 165-285, gnl|mm7|chr7 (123064622-123064477) | |
| 165-285, gnl|Mm7|chr7 (123064483-123064603) | |
| 165-285, gnl|monDom2|scaffold_5 (119834892-119834748) | |
| 165-285, gnl|panTro1|chr18 (30550221-30550367) | |
| 165-285, gnl|rheMac2|chr20 (27824770-27824916) | |
| 165-285, gnl|rn3|chr1 (186295143-186294998) | |
| 165-285, gnl|tetNig1|chrUn_random (40442353-40442482) | |
| 165-285, gnl|xenTro1|scaffold_805 (54069-54211) | |
| 381-936, gnl|bosTau2|chr25 (24592185-24591629) | |
| 381-936, gnl|Hg17|chr16 (29790551-29789992) | |
| 381-936, gnl|Mm7|chr7 (123066610-123067153) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-133, gnl|bosTau2|chr25 (24594353-24594221) | |
| 1-133, gnl|canFam2|chr6 (20935845-20935932) | |
| 1-133, gnl|danRer3|chr3 (8166321-8166408) | |
| 1-133, gnl|dasNov1|scaffold_17926 (17806-17888) | |
| 1-133, gnl|echTel1|scaffold_312693 (4187-4274) | |
| 1-133, gnl|fr1|chrUn (165435534-165435453) | |
| 1-133, gnl|galGal2|chr15 (7090890-7090806) | |
| 1-133, gnl|hg17|chr16 (29792055-29792142) | |
| 1-133, gnl|Hg17|chr16 (29792188-29792056) | |
| 1-133, gnl|loxAfr1|scaffold_187796 (517-430) | |
| 1-133, gnl|mm7|chr7 (123063772-123063685) | |
| 1-133, gnl|Mm7|chr7 (123063637-123063769) | |
| 1-133, gnl|monDom2|scaffold_5 (119834145-119834060) | |
| 1-133, gnl|oryCun1|scaffold_192408 (8337-8255) | |
| 1-133, gnl|panTro1|chr18 (30551072-30551159) | |
| 1-133, gnl|rheMac2|chr20 (27825623-27825710) | |
| 1-133, gnl|rn3|chr1 (186294302-186294215) | |
| 1-133, gnl|tetNig1|chrUn_random (40443193-40443274) | |
| 1-133, gnl|xenTro1|scaffold_805 (54774-54856) | |
| 165-285, gnl|bosTau2|chr25 (24593543-24593423) | |
| 165-285, gnl|canFam2|chr6 (20934987-20935132) | |
| 165-285, gnl|danRer3|chr3 (8165869-8166001) | |
| 165-285, gnl|dasNov1|scaffold_17926 (17034-17184) | |
| 165-285, gnl|echTel1|scaffold_312693 (3368-3517) | |
| 165-285, gnl|fr1|chrUn (165436040-165435902) | |
| 165-285, gnl|galGal2|chr15 (7091846-7091693) | |
| 165-285, gnl|hg17|chr16 (29791212-29791358) | |
| 165-285, gnl|Hg17|chr16 (29791350-29791230) | |
| 165-285, gnl|loxAfr1|scaffold_187796 (1354-1204) | |
| 165-285, gnl|mm7|chr7 (123064622-123064477) | |
| 165-285, gnl|Mm7|chr7 (123064483-123064603) | |
| 165-285, gnl|monDom2|scaffold_5 (119834892-119834748) | |
| 165-285, gnl|panTro1|chr18 (30550221-30550367) | |
| 165-285, gnl|rheMac2|chr20 (27824770-27824916) | |
| 165-285, gnl|rn3|chr1 (186295143-186294998) | |
| 165-285, gnl|tetNig1|chrUn_random (40442353-40442482) | |
| 165-285, gnl|xenTro1|scaffold_805 (54069-54211) | |
| 381-936, gnl|bosTau2|chr25 (24592185-24591629) | |
| 381-936, gnl|Hg17|chr16 (29790551-29789992) | |
| 381-936, gnl|Mm7|chr7 (123066610-123067153) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pgl (0.118483) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pgl (0.118483) |