Non-Coding RNA Search

Ss1.1-Pig2-72G17.5

Sequence:


               
               CCACGCGTGCGCTTGTATTCCTTATTCCTTAGGTGAGAACTAGTGACACTTTCTTGTTTC
AGTGTACTCAAACGCAGTGCTCATAGGAAGTGTTCTGCTCATCGGGTCCATCAGCAAAGG
CACTTCCTCCCCTGCTGTTAGGGTTTCTCCTCAGCGTATGGTTGATTCATCCCCAGTGGA
AAGACTTCACCCATTGCCTGGCAAAACCCTGATCCTTTATGGGTTTTTTACTTTACTTAG
CTAAAATCTCACAGCATGTTAGTCATAAGCCCCACTCCACCCCAAATACTTACATGTGAG
TGTGTGAGAAATACGTGTGAGGGGGTGATGTTAAGTTCTCATGCTTACTTATTCTTTCAG
CAAGTAGTTATTAGTAAACTCTCTACGGTTTTAGATAATACAGAAATGTTTGAAGAGCAG
ACATGGGCCAGCACTTCCGTCTGGCATTGCAGTCTGTACAGGGTGTGTCAGTGCTGTCCT
AAGAGTGCTCTCTAAGTAGCATTAGCTGATCTAATCTCAACAGTTCATTCACAAGTATTC
GTTTTGTATTAATTATCCAGCCATTGTAGTTTCGGTTTGGTTAAGAGGTACTGTTTAAGT
TGCGGCGGTATTTAACTGAATGATGGATGAAAGGCCTGATGCCTATCGGGGACTCTCTTA
CCATGTCTTTCTTAGGTAATATGTATTATAAAAACATTTTTAAGGCCTTGGTAGCAATCA
TGAAGTAAGAAGAATTCAATGTGTGTCAGTTACACCAACCTGTGGATGGTATTCAAATGT
GATTTTCTGTTAGCTTTTCTGTATGTATTATTGATGACTGGTTTGTTTTTAGGTATTTAA
GGCTAATAAACCGTTCTCATACTGGCAGTCGCTTTGTTAGTAATAGAGTGTTAGTGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTGCGCTTGTATTCCTTATTCCTTAGGTGAGAACTAGTGACACTTTCTTGTTTC
AGTGTACTCAAACGCAGTGCTCATAGGAAGTGTTCTGCTCATCGGGTCCATCAGCAAAGG
CACTTCCTCCCCTGCTGTTAGGGTTTCTCCTCAGCGTATGGTTGATTCATCCCCAGTGGA
AAGACTTCACCCATTGCCTGGCAAAACCCTGATCCTTTATGGGTTTTTTACTTTACTTAG
CTAAAATCTCACAGCATGTTAGTCATAAGCCCCACTCCACCCCAAATACTTACATGTGAG
TGTGTGAGAAATACGTGTGAGGGGGTGATGTTAAGTTCTCATGCTTACTTATTCTTTCAG
CAAGTAGTTATTAGTAAACTCTCTACGGTTTTAGATAATACAGAAATGTTTGAAGAGCAG
ACATGGGCCAGCACTTCCGTCTGGCATTGCAGTCTGTACAGGGTGTGTCAGTGCTGTCCT
AAGAGTGCTCTCTAAGTAGCATTAGCTGATCTAATCTCAACAGTTCATTCACAAGTATTC
GTTTTGTATTAATTATCCAGCCATTGTAGTTTCGGTTTGGTTAAGAGGTACTGTTTAAGT
TGCGGCGGTATTTAACTGAATGATGGATGAAAGGCCTGATGCCTATCGGGGACTCTCTTA
CCATGTCTTTCTTAGGTAATATGTATTATAAAAACATTTTTAAGGCCTTGGTAGCAATCA
TGAAGTAAGAAGAATTCAATGTGTGTCAGTTACACCAACCTGTGGATGGTATTCAAATGT
GATTTTCTGTTAGCTTTTCTGTATGTATTATTGATGACTGGTTTGTTTTTAGGTATTTAA
GGCTAATAAACCGTTCTCATACTGGCAGTCGCTTTGTTAGTAATAGAGTGTTAGTGGTGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               23-472, gnl|bosTau2|chr5 (5291174-5290706)
               

               
               23-472, gnl|Hg17|chr12 (78485270-78484859)
               

               
               23-472, gnl|Mm7|chr10 (107879522-107880185)
               


               
               486-899, gnl|bosTau2|chr5 (5290717-5290313)
               

               
               486-899, gnl|Hg17|chr12 (78484870-78484442)
               

               
               486-899, gnl|Mm7|chr10 (107880175-107880788)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-472, gnl|bosTau2|chr5 (5291174-5290706)
               

               
               23-472, gnl|Hg17|chr12 (78485270-78484859)
               

               
               23-472, gnl|Mm7|chr10 (107879522-107880185)
               


               
               486-899, gnl|bosTau2|chr5 (5290717-5290313)
               

               
               486-899, gnl|Hg17|chr12 (78484870-78484442)
               

               
               486-899, gnl|Mm7|chr10 (107880175-107880788)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fat (0.147427)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               liv (0.146284)

	23-472, gnl\|bosTau2\|chr5 (5291174-5290706)
	23-472, gnl\|Hg17\|chr12 (78485270-78484859)
	23-472, gnl\|Mm7\|chr10 (107879522-107880185)

	486-899, gnl\|bosTau2\|chr5 (5290717-5290313)
	486-899, gnl\|Hg17\|chr12 (78484870-78484442)
	486-899, gnl\|Mm7\|chr10 (107880175-107880788)