Non-Coding RNA Search

Ss1.1-Pig2-72P21.5

Sequence:


               
               GGGAGGGAGAGGGCTGGACATGGGCTGGCAGGGATGCGATACATAGCATTTGTGGCCCCT
GGCTGGGCTTACCTGGGTGGGCAGCATTCCTAACTCGAGGGACTCTGGGGTGATGTAGGG
AGGGAGATGCTGGACTGAGTGGCCAGAGGGAGGGGCATTTTTTCTCCCTTCCAAACCTTC
CAAACTGGAACTCCCAATTTCAGATGGGCTCAAAGAGGGCTTAGGTTTGGAGATGGGTGT
CTTTTTGTGTCCTTGTTACTTTATTTTATGGTGATCCGGCTCAGAGATGTTTACAGGAAA
AACACACAACTAGAGAAAAGTACAGATTTCCCATGGGTCTCAAGCACAGTCCTGCTGTTG
TGGCTTCAGCCTTCAGAGCTGTCAACCCAGGAGTAATTGTCCCAACCACCCAACCCCACC
CAGGGCCAGCACAGGCTCCATGCCATGACCCCTCCTGGCTTAGCACGTGCTGAGACCCAG
GGTCCCCTATGTCTGGGCATCCCCTGCTCAGGGTCTCCCAGAAGAGCTGCTGCAGTGAAT
GGGAGGGAGTTGTTCCCAAGGAGTGGAGTAGAGACCAAGTTAAGTGTCCCCTGTGGCTCG
GGACCCTCCCCGAGGGCAGTTCGGCTAATCCCTCTGTCCTCCATGCCCACTGCTCCCTCG
TGGGCAGCTAGGCAGGCCCGGGGGCCCTGGTGGGGAGCACTGTCCCTTGAGGCCACCTGC
TGGTCCTCAGATGCTGCCAGGGGAGGCCACTGGGTGGTCCCTTGCGGTTTCCTGTTCTCA
TTGCACAATGGCTGCGTCATCCGTGGGTATTAAAGGGACACTGTCAAGTACTTTTTTAAA
CTAGTTTTTAGGGTTTTTTAAAACTCTCTGTTGTTTGTATTATTCTCTTAAAAGCTTGAA
AATAAAATTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGGAGAGGGCTGGACATGGGCTGGCAGGGATGCGATACATAGCATTTGTGGCCCCT
GGCTGGGCTTACCTGGGTGGGCAGCATTCCTAACTCGAGGGACTCTGGGGTGATGTAGGG
AGGGAGATGCTGGACTGAGTGGCCAGAGGGAGGGGCATTTTTTCTCCCTTCCAAACCTTC
CAAACTGGAACTCCCAATTTCAGATGGGCTCAAAGAGGGCTTAGGTTTGGAGATGGGTGT
CTTTTTGTGTCCTTGTTACTTTATTTTATGGTGATCCGGCTCAGAGATGTTTACAGGAAA
AACACACAACTAGAGAAAAGTACAGATTTCCCATGGGTCTCAAGCACAGTCCTGCTGTTG
TGGCTTCAGCCTTCAGAGCTGTCAACCCAGGAGTAATTGTCCCAACCACCCAACCCCACC
CAGGGCCAGCACAGGCTCCATGCCATGACCCCTCCTGGCTTAGCACGTGCTGAGACCCAG
GGTCCCCTATGTCTGGGCATCCCCTGCTCAGGGTCTCCCAGAAGAGCTGCTGCAGTGAAT
GGGAGGGAGTTGTTCCCAAGGAGTGGAGTAGAGACCAAGTTAAGTGTCCCCTGTGGCTCG
GGACCCTCCCCGAGGGCAGTTCGGCTAATCCCTCTGTCCTCCATGCCCACTGCTCCCTCG
TGGGCAGCTAGGCAGGCCCGGGGGCCCTGGTGGGGAGCACTGTCCCTTGAGGCCACCTGC
TGGTCCTCAGATGCTGCCAGGGGAGGCCACTGGGTGGTCCCTTGCGGTTTCCTGTTCTCA
TTGCACAATGGCTGCGTCATCCGTGGGTATTAAAGGGACACTGTCAAGTACTTTTTTAAA
CTAGTTTTTAGGGTTTTTTAAAACTCTCTGTTGTTTGTATTATTCTCTTAAAAGCTTGAA
AATAAAATTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               647-751, - strand, RNAz p=0.625987

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               647-751, - strand, RNAz p=0.625987

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-912, gnl|bosTau2|chr2 (58863199-58862255)
               

               
               1-912, gnl|Hg17|chr2 (216949085-216948104)
               

               
               1-912, gnl|Mm7|chr1 (72670078-72668964)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr2 (58863199-58862255)
               

               
               1-912, gnl|Hg17|chr2 (216949085-216948104)
               

               
               1-912, gnl|Mm7|chr1 (72670078-72668964)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-912, gnl\|bosTau2\|chr2 (58863199-58862255)
	1-912, gnl\|Hg17\|chr2 (216949085-216948104)
	1-912, gnl\|Mm7\|chr1 (72670078-72668964)