Non-Coding RNA Search

Ss1.1-Pig2-73M04.5

Sequence:


               
               GTAACTGACGAGACCGGCGGCAAGTACATCGCCTCAACACAGCGACCTGACGGGACCTGG
CGAAAGCAACGGAGGGTGAAAGAAGGCTATGTGCCCCAGGAGGAGGTCCCAGTGTATGAG
AACAAATATGTGAAATTTTTCAAGAGTAAACCAGAACTGCCCCCCGGGCTGAGCCCTGAG
GCCACCACTCCGGTCACCGCATCCAGGCCTGAAGGTGGTGAGCCAGGCCTCTCCAAGACA
GCCAAACGCAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAGCAGGAGAAAGGGGAGGCG
GAGACCTTGAGCCGGACTCTCGAGAAGGTGACCCTGGGAGAGACAGCCCAAGCCCCCAGT
GCTCCACAGGTCTCCCGAGCAGTGCCTACAGCTGCCTCAGACCAGCCCGACTCAGCTGCC
ACCACCGAGAAGGCCAAGAAGATAAAGAACCTGAAGAAGAAGCTTCGGCAGGTGGAAGAG
TTGCAGCAGCGGATCCAGGCTGGGGAAATCAGCCAGCCTAGCAAAGAGCAGCTGGAGAAG
CTGGCGAGGAGGAGGGCGTTGGAGGAGGAGCTAGAGGACTTGGAGCTGGGCCTGTGAGGC
CCTTGGGGAACAGGGGATGGACTGCAAAACAAACCATGGGGCTCTCTGGGGTCCTGGGGA
AGGTGGGCAGCAGCAGTCAGGAGGGGGAGCGCCGTACTGGCTCACTTCCACCTCTCATGG
CCCAACTCCGTCCTCCAGAGCCTAGCATCTCCCTCATTCCTTCCCTTGTCTTCCCAACTC
CTATTTTTTTGGACTTTTCCCTCTCCTATTCCCAGTGTTTAAAATCTCAGTGACTACCCC
AGGTACCTTTGCTGCTGATTTGGGTGTCTTGTTTAAAAGAAAATTGGGCGGGTGGGAATC
TCTTGGAGAACGGAGGTTGAGGGTAGGGGGAGTACGCCCAAGTCTTGGAGTCTTGGTTCC
TGTTCACAGTGTTTATGGGATATTTCCCCCTCCATCCCTCACCTCTTTTTTTCTCTTTTT
TCTTTCTTTTTTTTTAAAGAACAGAATAAACTCAAGTAGACAACAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAACTGACGAGACCGGCGGCAAGTACATCGCCTCAACACAGCGACCTGACGGGACCTGG
CGAAAGCAACGGAGGGTGAAAGAAGGCTATGTGCCCCAGGAGGAGGTCCCAGTGTATGAG
AACAAATATGTGAAATTTTTCAAGAGTAAACCAGAACTGCCCCCCGGGCTGAGCCCTGAG
GCCACCACTCCGGTCACCGCATCCAGGCCTGAAGGTGGTGAGCCAGGCCTCTCCAAGACA
GCCAAACGCAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAGCAGGAGAAAGGGGAGGCG
GAGACCTTGAGCCGGACTCTCGAGAAGGTGACCCTGGGAGAGACAGCCCAAGCCCCCAGT
GCTCCACAGGTCTCCCGAGCAGTGCCTACAGCTGCCTCAGACCAGCCCGACTCAGCTGCC
ACCACCGAGAAGGCCAAGAAGATAAAGAACCTGAAGAAGAAGCTTCGGCAGGTGGAAGAG
TTGCAGCAGCGGATCCAGGCTGGGGAAATCAGCCAGCCTAGCAAAGAGCAGCTGGAGAAG
CTGGCGAGGAGGAGGGCGTTGGAGGAGGAGCTAGAGGACTTGGAGCTGGGCCTGTGAGGC
CCTTGGGGAACAGGGGATGGACTGCAAAACAAACCATGGGGCTCTCTGGGGTCCTGGGGA
AGGTGGGCAGCAGCAGTCAGGAGGGGGAGCGCCGTACTGGCTCACTTCCACCTCTCATGG
CCCAACTCCGTCCTCCAGAGCCTAGCATCTCCCTCATTCCTTCCCTTGTCTTCCCAACTC
CTATTTTTTTGGACTTTTCCCTCTCCTATTCCCAGTGTTTAAAATCTCAGTGACTACCCC
AGGTACCTTTGCTGCTGATTTGGGTGTCTTGTTTAAAAGAAAATTGGGCGGGTGGGAATC
TCTTGGAGAACGGAGGTTGAGGGTAGGGGGAGTACGCCCAAGTCTTGGAGTCTTGGTTCC
TGTTCACAGTGTTTATGGGATATTTCCCCCTCCATCCCTCACCTCTTTTTTTCTCTTTTT
TCTTTCTTTTTTTTTAAAGAACAGAATAAACTCAAGTAGACAACAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N8E7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N8E7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               393-791, - strand, RNAz p=0.953494
               

               
               908-1065, - strand, RNAz p=0.998973

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-791, - strand, RNAz p=0.953494
               

               
               908-1065, - strand, RNAz p=0.998973

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-1065, gnl|bosTau2|chr5 (35436129-35437077)
               

               
               114-1065, gnl|Hg17|chr12 (54582406-54581468)
               

               
               114-1065, gnl|Mm7|chr10 (128267378-128268332)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-1065, gnl|bosTau2|chr5 (35436129-35437077)
               

               
               114-1065, gnl|Hg17|chr12 (54582406-54581468)
               

               
               114-1065, gnl|Mm7|chr10 (128267378-128268332)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               elu (0.385356)
               

               
               med (0.232504)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               med (0.232504)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	393-791, - strand, RNAz p=0.953494
	908-1065, - strand, RNAz p=0.998973

	114-1065, gnl\|bosTau2\|chr5 (35436129-35437077)
	114-1065, gnl\|Hg17\|chr12 (54582406-54581468)
	114-1065, gnl\|Mm7\|chr10 (128267378-128268332)

	elu (0.385356)
	med (0.232504)
	ese (0.126502)
	eep (0.122564)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)
	jej (0.0989218)