Non-Coding RNA Search

Ss1.1-Pig2-74C01.5

Sequence:


               
               TTTTTTTTTTTTTTCTCTTTTAATCCTCACAAATGACCCGATTGACCCAAAAAAGAAAAA
AGAAACAGAAAAAAAAAAAAAAAAAAAAAGGCATCATTTTTGTACAAATAGCTTTGAGAA
GCCTCTGTTGTGTGGCTGTGACCCATCTCTGGTAACATTTTATTTCTTGCTATTTGTTTT
CGACATCATCAGTCAAAAGTTGATCCGCCTGGCATGGGGGTGGGAGAGGCACCCGTCGGC
CCCTGGGCGTTGTCCCTTCTGTCTTTGGTTAGCCATACGATGTTTGTTCTCAGCACTGTA
CAACGGTCCCTCTATGATATGGAGAAGCAATATCACTGTATGAAACTCACACCATGTATT
ATTATTATTCACTAGCACCCTAGGTGTGATAATTGAAGTAAATATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTCTCTTTTAATCCTCACAAATGACCCGATTGACCCAAAAAAGAAAAA
AGAAACAGAAAAAAAAAAAAAAAAAAAAAGGCATCATTTTTGTACAAATAGCTTTGAGAA
GCCTCTGTTGTGTGGCTGTGACCCATCTCTGGTAACATTTTATTTCTTGCTATTTGTTTT
CGACATCATCAGTCAAAAGTTGATCCGCCTGGCATGGGGGTGGGAGAGGCACCCGTCGGC
CCCTGGGCGTTGTCCCTTCTGTCTTTGGTTAGCCATACGATGTTTGTTCTCAGCACTGTA
CAACGGTCCCTCTATGATATGGAGAAGCAATATCACTGTATGAAACTCACACCATGTATT
ATTATTATTCACTAGCACCCTAGGTGTGATAATTGAAGTAAATATCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               79-408, gnl|bosTau2|chr25 (32105454-32105769)
               

               
               79-408, gnl|Hg17|chr7 (101494582-101494934)
               

               
               79-408, gnl|Mm7|chr5 (135238085-135237704)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-408, gnl|bosTau2|chr25 (32105454-32105769)
               

               
               79-408, gnl|Hg17|chr7 (101494582-101494934)
               

               
               79-408, gnl|Mm7|chr5 (135238085-135237704)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               med (0.232504)
               

               
               fhi (0.169578)
               

               
               che (0.136314)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               fhi (0.169578)
               

               
               che (0.136314)
               

               
               ecc (0.115035)

	79-408, gnl\|bosTau2\|chr25 (32105454-32105769)
	79-408, gnl\|Hg17\|chr7 (101494582-101494934)
	79-408, gnl\|Mm7\|chr5 (135238085-135237704)