Ss1.1-Pig2-74J01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGTCTGGCGGGGCAGCCGGTGCCCGACGTGGATCCCACACGCTCCGAGACAGTGTCTT CCTCAGCTCGTGCTTACCCCGGGCCAGGGCCAAATTCGGGAGCCTCTCGGTTTAGAAAAG ATGCTGGAGAAGTCGCTGGCGGCC------------------------------------ ------------------------------------------------------------ GGAAATTCCTTGCCACCGGACCGCACCCGCCCTTGAGGACCTCCCCGATGTCTTTGGGCA GAGAGGAAGCCAGACGGAGCTGGGGACTGTGAAGTGACAATCCTCAGCCCTGTGTGTGCC GGGAGCCCCCCGAGGGCTGCAGAGGAAGCCTGGTGTGGGCTTGCTGGGGACAGAGCTCTT CTCAGAGGAGGCGGGGACCCGTGGAGTACGTGACTCCTGCCCTTCCAGCCTGCACGCTCC AGTTAGCAGGACAGGGACCCCTCCCCACCCATCCCCAATCTTCACAGGCTTCCTGCTCTG CCGGGAGGCCCTGTCACCACGCTCACACGTGCGCGCGCGCACACACACACACACACACAC ACACACACACACACACACACACTCTCACCCTTCCCTTCTACGCACCCGTGAGAAGACCAT CTGCATCTGGGGGTGGGGGTAGAGAGAGCGCTGCCAGGGTGCTCATATCCACTCTCTTTC TCCCACCGGTGCCTCCCCCCCAGGTGGTGAGCATCTTATATGTTTAAAGCAAAACACCAT GATTCCCGTTCTCTTTCTGCTGCTCTGCCGGCACAGTGCACAGGGGTTATTTTTAGCAGG GATGCAGGGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGTCTGGCGGGGCAGCCGGTGCCCGACGTGGATCCCACACGCTCCGAGACAGTGTCTT CCTCAGCTCGTGCTTACCCCGGGCCAGGGCCAAATTCGGGAGCCTCTCGGTTTAGAAAAG ATGCTGGAGAAGTCGCTGGCGGCC------------------------------------ ------------------------------------------------------------ GGAAATTCCTTGCCACCGGACCGCACCCGCCCTTGAGGACCTCCCCGATGTCTTTGGGCA GAGAGGAAGCCAGACGGAGCTGGGGACTGTGAAGTGACAATCCTCAGCCCTGTGTGTGCC GGGAGCCCCCCGAGGGCTGCAGAGGAAGCCTGGTGTGGGCTTGCTGGGGACAGAGCTCTT CTCAGAGGAGGCGGGGACCCGTGGAGTACGTGACTCCTGCCCTTCCAGCCTGCACGCTCC AGTTAGCAGGACAGGGACCCCTCCCCACCCATCCCCAATCTTCACAGGCTTCCTGCTCTG CCGGGAGGCCCTGTCACCACGCTCACACGTGCGCGCGCGCACACACACACACACACACAC ACACACACACACACACACACACTCTCACCCTTCCCTTCTACGCACCCGTGAGAAGACCAT CTGCATCTGGGGGTGGGGGTAGAGAGAGCGCTGCCAGGGTGCTCATATCCACTCTCTTTC TCCCACCGGTGCCTCCCCCCCAGGTGGTGAGCATCTTATATGTTTAAAGCAAAACACCAT GATTCCCGTTCTCTTTCTGCTGCTCTGCCGGCACAGTGCACAGGGGTTATTTTTAGCAGG GATGCAGGGAAC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 315-414, - strand, RNAz p=0.96358 | |
| 339-457, - strand, RNAz p=0.586978 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 315-414, - strand, RNAz p=0.96358 | |
| 339-457, - strand, RNAz p=0.586978 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 145-275, gnl|bosTau2|chr23 (7203705-7203834) | |
| 145-275, gnl|canFam2|chr12 (7856392-7857283) | |
| 145-275, gnl|echTel1|scaffold_321847 (45516-46369) | |
| 145-275, gnl|hg17|chr6 (35795380-35796289) | |
| 145-275, gnl|Hg17|chr6 (35796303-35796175) | |
| 145-275, gnl|loxAfr1|scaffold_24778 (8174-7286) | |
| 145-275, gnl|mm7|chr17 (26696913-26697740) | |
| 145-275, gnl|Mm7|chr17 (26697755-26697622) | |
| 145-275, gnl|oryCun1|scaffold_198284 (24734-23865) | |
| 145-275, gnl|panTro1|chr5 (36253065-36253957) | |
| 145-275, gnl|rheMac2|chr4 (35452504-35453412) | |
| 145-275, gnl|rn3|chr20 (6750237-6751069) | |
| 278-466, gnl|bosTau2|chr23 (7203878-7204065) | |
| 278-466, gnl|canFam2|chr12 (7856392-7857283) | |
| 278-466, gnl|echTel1|scaffold_321847 (45516-46369) | |
| 278-466, gnl|hg17|chr6 (35795380-35796289) | |
| 278-466, gnl|Hg17|chr6 (35796142-35795948) | |
| 278-466, gnl|loxAfr1|scaffold_24778 (8174-7286) | |
| 278-466, gnl|mm7|chr17 (26696913-26697740) | |
| 278-466, gnl|Mm7|chr17 (26697584-26697415) | |
| 278-466, gnl|oryCun1|scaffold_198284 (24734-23865) | |
| 278-466, gnl|panTro1|chr5 (36253065-36253957) | |
| 278-466, gnl|rheMac2|chr4 (35452504-35453412) | |
| 278-466, gnl|rn3|chr20 (6750237-6751069) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 145-275, gnl|bosTau2|chr23 (7203705-7203834) | |
| 145-275, gnl|canFam2|chr12 (7856392-7857283) | |
| 145-275, gnl|echTel1|scaffold_321847 (45516-46369) | |
| 145-275, gnl|hg17|chr6 (35795380-35796289) | |
| 145-275, gnl|Hg17|chr6 (35796303-35796175) | |
| 145-275, gnl|loxAfr1|scaffold_24778 (8174-7286) | |
| 145-275, gnl|mm7|chr17 (26696913-26697740) | |
| 145-275, gnl|Mm7|chr17 (26697755-26697622) | |
| 145-275, gnl|oryCun1|scaffold_198284 (24734-23865) | |
| 145-275, gnl|panTro1|chr5 (36253065-36253957) | |
| 145-275, gnl|rheMac2|chr4 (35452504-35453412) | |
| 145-275, gnl|rn3|chr20 (6750237-6751069) | |
| 278-466, gnl|bosTau2|chr23 (7203878-7204065) | |
| 278-466, gnl|canFam2|chr12 (7856392-7857283) | |
| 278-466, gnl|echTel1|scaffold_321847 (45516-46369) | |
| 278-466, gnl|hg17|chr6 (35795380-35796289) | |
| 278-466, gnl|Hg17|chr6 (35796142-35795948) | |
| 278-466, gnl|loxAfr1|scaffold_24778 (8174-7286) | |
| 278-466, gnl|mm7|chr17 (26696913-26697740) | |
| 278-466, gnl|Mm7|chr17 (26697584-26697415) | |
| 278-466, gnl|oryCun1|scaffold_198284 (24734-23865) | |
| 278-466, gnl|panTro1|chr5 (36253065-36253957) | |
| 278-466, gnl|rheMac2|chr4 (35452504-35453412) | |
| 278-466, gnl|rn3|chr20 (6750237-6751069) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) | |
| jej (0.0989218) |