Non-Coding RNA Search

Ss1.1-Pig2-77F08.5

Sequence:


               
               AATATATGACATCAGGGCAGGAATCTTTAAGACTGAACCCCAAGGAGGCGAGGCTCTCCA
AGGAGCCGGAGAGGCCTCGGGCTCGGCAGCCGCCTGCCCCCGAGACACACTCACGGGACT
GCTACAAGGAGGAGGAACACCTCGCTCAGGCAGTCGTCCCTCCCCCTAAACCAGAGAGGA
GCCACAGCCTGAAACTCCACCACACGCAGAGCATGGAGAGGGACCCCGGTGTGCTGTACC
AGTACCAGACGCACGGCAAGCGCCAGAGCAGTGTGACTGCAGTGCCCCAGTATGATAACC
TGGAGGGCTACCACTCCCCACCCCAGCACCAGCGAGGAGGCTTCGGCGCGGCAGCGGCAG
TGGCAGTGGGGACGTACGCGCCCTCCGGCTTTCCCCACCCACAGAACAGGACATACGCCA
CGGCTCTGGGTCAGGGCGCCTTCCTGCCCACAGAGCTGTCCTTGCAGCATCCTGAGACAC
AGGTCCATGCAGAATGAGCCCTGGGAGCAATAGAGTTGAAGCAGCCTCTGCTGGACAGTG
GACTGTTCTATTTTTTTCAGTAACCAAAAATTAAAAAATAAAATAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATATGACATCAGGGCAGGAATCTTTAAGACTGAACCCCAAGGAGGCGAGGCTCTCCA
AGGAGCCGGAGAGGCCTCGGGCTCGGCAGCCGCCTGCCCCCGAGACACACTCACGGGACT
GCTACAAGGAGGAGGAACACCTCGCTCAGGCAGTCGTCCCTCCCCCTAAACCAGAGAGGA
GCCACAGCCTGAAACTCCACCACACGCAGAGCATGGAGAGGGACCCCGGTGTGCTGTACC
AGTACCAGACGCACGGCAAGCGCCAGAGCAGTGTGACTGCAGTGCCCCAGTATGATAACC
TGGAGGGCTACCACTCCCCACCCCAGCACCAGCGAGGAGGCTTCGGCGCGGCAGCGGCAG
TGGCAGTGGGGACGTACGCGCCCTCCGGCTTTCCCCACCCACAGAACAGGACATACGCCA
CGGCTCTGGGTCAGGGCGCCTTCCTGCCCACAGAGCTGTCCTTGCAGCATCCTGAGACAC
AGGTCCATGCAGAATGAGCCCTGGGAGCAATAGAGTTGAAGCAGCCTCTGCTGGACAGTG
GACTGTTCTATTTTTTTCAGTAACCAAAAATTAAAAAATAAAATAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.947465

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.947465

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-582, gnl|bosTau2|chr29 (23104954-23105526)
               

               
               1-582, gnl|Hg17|chr11 (128344499-128343924)
               

               
               1-582, gnl|Mm7|chr9 (32161818-32162400)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-582, gnl|bosTau2|chr29 (23104954-23105526)
               

               
               1-582, gnl|Hg17|chr11 (128344499-128343924)
               

               
               1-582, gnl|Mm7|chr9 (32161818-32162400)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               pla (0.133672)

	1-582, gnl\|bosTau2\|chr29 (23104954-23105526)
	1-582, gnl\|Hg17\|chr11 (128344499-128343924)
	1-582, gnl\|Mm7\|chr9 (32161818-32162400)