Non-Coding RNA Search

Ss1.1-Pig2-77J14.5

Sequence:


               
               CGGAAGCCGTCAGTTCCCTGGCAGGGCCAGCTGGACCAGCCGAGAGACAGAGAACAGGCT
CCGGGCACTCACCGACCCTTGAGCAAGCTGGCAGAGCTGCAGTGTGAGGTGGCTGCCTTG
CGCCAGGATCAGAAGGCCCTGTGCGGCCTTGTGGAGTCACTCCGCACCCACGTGCGTGCC
TTGAGCGAACAGCAGGAGCTACTTCGGAGCCAGCTCCAGAACTTGGATTCCTTGATCGGA
GAAAGGACTGCAAAATTGGATCCAGAGCTTGATTCTCCACTCAGTGAGGGCCACAGGCTG
AAGAGTCTGGAGTGCCGCCTGGCTGAGATAGAGAGTACTCAGGCCCAGCTGAGGGATACC
ATCCAAAGCATGCAGCTTCTTCCCAGGATGTCAGGGTTCGGGAGCCAGCCCCCGCCACTC
AAAGCACCCTGCGTCAATGGAGACACCACTTGAGCCGCCCACTGGGCCAAATGTGCTCTG
GGAACAGAGAAAAGGCAGTCTTAGGGGCCTGTCTGATCCCTACCTCAACGCTATGTGGCA
TGCAGTAGGGAATGGAGTTGTAGGTGCCAACAAGTCTGGCACTAAAAGGTGGCCCAGTAA
AATCTTGATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAAGCCGTCAGTTCCCTGGCAGGGCCAGCTGGACCAGCCGAGAGACAGAGAACAGGCT
CCGGGCACTCACCGACCCTTGAGCAAGCTGGCAGAGCTGCAGTGTGAGGTGGCTGCCTTG
CGCCAGGATCAGAAGGCCCTGTGCGGCCTTGTGGAGTCACTCCGCACCCACGTGCGTGCC
TTGAGCGAACAGCAGGAGCTACTTCGGAGCCAGCTCCAGAACTTGGATTCCTTGATCGGA
GAAAGGACTGCAAAATTGGATCCAGAGCTTGATTCTCCACTCAGTGAGGGCCACAGGCTG
AAGAGTCTGGAGTGCCGCCTGGCTGAGATAGAGAGTACTCAGGCCCAGCTGAGGGATACC
ATCCAAAGCATGCAGCTTCTTCCCAGGATGTCAGGGTTCGGGAGCCAGCCCCCGCCACTC
AAAGCACCCTGCGTCAATGGAGACACCACTTGAGCCGCCCACTGGGCCAAATGTGCTCTG
GGAACAGAGAAAAGGCAGTCTTAGGGGCCTGTCTGATCCCTACCTCAACGCTATGTGGCA
TGCAGTAGGGAATGGAGTTGTAGGTGCCAACAAGTCTGGCACTAAAAGGTGGCCCAGTAA
AATCTTGATTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N2T9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N2T9_HUMAN

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               86-246, gnl|bosTau2|chr7 (6878703-6878863)
               

               
               86-246, gnl|canFam2|chr20 (49744324-49744111)
               

               
               86-246, gnl|dasNov1|scaffold_159941 (1562-1777)
               

               
               86-246, gnl|hg17|chr19 (15424454-15424667)
               

               
               86-246, gnl|Hg17|chr19 (15424628-15424468)
               

               
               86-246, gnl|mm7|chr17 (30587059-30587272)
               

               
               86-246, gnl|Mm7|chr17 (30587233-30587073)
               

               
               86-246, gnl|oryCun1|scaffold_76595 (1385-1162)
               

               
               86-246, gnl|rheMac2|chr19 (15043442-15043655)
               

               
               86-246, gnl|rn3|chr7 (12955303-12955516)
               


               
               309-610, gnl|bosTau2|chr7 (6879527-6879828)
               

               
               309-610, gnl|Hg17|chr19 (15423750-15423444)
               

               
               309-610, gnl|Mm7|chr17 (30586152-30585844)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-246, gnl|bosTau2|chr7 (6878703-6878863)
               

               
               86-246, gnl|canFam2|chr20 (49744324-49744111)
               

               
               86-246, gnl|dasNov1|scaffold_159941 (1562-1777)
               

               
               86-246, gnl|hg17|chr19 (15424454-15424667)
               

               
               86-246, gnl|Hg17|chr19 (15424628-15424468)
               

               
               86-246, gnl|mm7|chr17 (30587059-30587272)
               

               
               86-246, gnl|Mm7|chr17 (30587233-30587073)
               

               
               86-246, gnl|oryCun1|scaffold_76595 (1385-1162)
               

               
               86-246, gnl|rheMac2|chr19 (15043442-15043655)
               

               
               86-246, gnl|rn3|chr7 (12955303-12955516)
               


               
               309-610, gnl|bosTau2|chr7 (6879527-6879828)
               

               
               309-610, gnl|Hg17|chr19 (15423750-15423444)
               

               
               309-610, gnl|Mm7|chr17 (30586152-30585844)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)

	86-246, gnl\|bosTau2\|chr7 (6878703-6878863)
	86-246, gnl\|canFam2\|chr20 (49744324-49744111)
	86-246, gnl\|dasNov1\|scaffold_159941 (1562-1777)
	86-246, gnl\|hg17\|chr19 (15424454-15424667)
	86-246, gnl\|Hg17\|chr19 (15424628-15424468)
	86-246, gnl\|mm7\|chr17 (30587059-30587272)
	86-246, gnl\|Mm7\|chr17 (30587233-30587073)
	86-246, gnl\|oryCun1\|scaffold_76595 (1385-1162)
	86-246, gnl\|rheMac2\|chr19 (15043442-15043655)
	86-246, gnl\|rn3\|chr7 (12955303-12955516)

	309-610, gnl\|bosTau2\|chr7 (6879527-6879828)
	309-610, gnl\|Hg17\|chr19 (15423750-15423444)
	309-610, gnl\|Mm7\|chr17 (30586152-30585844)