Ss1.1-Pig2-78E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTGGACGCTTTCTTCACAAGGCCCTTCTACAAGGCACTCCTGAGACTGCCCTGCGACT TGAGTGACCTGGAGTACCTGGATGAGGAATTCCACCAGAGCTTGCAGTGGATGAAGGACC ACAACATCACAGACATCCTCGACCTCACGTTCACGGTCAACGAAGAAGTTTTTGGACAGG TAACAGAGAGGGAGTTAAAATCCGGAGGAGCCAACACGCAGGTGACAGAGAAGAACAAGA AAGAGTACATCGAGAGGATGGTGCGGTGGCGCGTGGAGCGCGGCGTGGTGCAGCAGACCG AGGCCCTGGTGCGGGGCTTCTACGAGGTGGTGGACTCGAGGCTGGTCTCCGTGTTCGATG CCAGGGAGCTGGAGCTAGTGATTGCTGGCACAGCGGAGATCGACCTGGCGGACTGGCGGA ACAACGCGGAGTACAGGGGAGGTTATCACGATGGGCATCTTGTGATCCGCTGGTTCTGGG CCGCCGTGGAGCGTTTCAACAATGAGCAGAGACTCCGATTACTGCAGTTCGTCACAGGAA CATCGAGTGTGCCCTACGAAGGCTTTGCAGCCCTTCGAGGAAGCAACGGGCTTCGGCGTT TCTGCATAGAGAAATGGGGGAAAATCACGTCTCTCCCCAGGGCACACACGTGCTTCAATC GACTGGACCTTCCACCGTATCCCTCATACTCCATGTTGTATGAAAAGCTGTTAACGGCAG TCGAAGAAACCAGCACCTTTGGACTTGAATGAGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTGGACGCTTTCTTCACAAGGCCCTTCTACAAGGCACTCCTGAGACTGCCCTGCGACT TGAGTGACCTGGAGTACCTGGATGAGGAATTCCACCAGAGCTTGCAGTGGATGAAGGACC ACAACATCACAGACATCCTCGACCTCACGTTCACGGTCAACGAAGAAGTTTTTGGACAGG TAACAGAGAGGGAGTTAAAATCCGGAGGAGCCAACACGCAGGTGACAGAGAAGAACAAGA AAGAGTACATCGAGAGGATGGTGCGGTGGCGCGTGGAGCGCGGCGTGGTGCAGCAGACCG AGGCCCTGGTGCGGGGCTTCTACGAGGTGGTGGACTCGAGGCTGGTCTCCGTGTTCGATG CCAGGGAGCTGGAGCTAGTGATTGCTGGCACAGCGGAGATCGACCTGGCGGACTGGCGGA ACAACGCGGAGTACAGGGGAGGTTATCACGATGGGCATCTTGTGATCCGCTGGTTCTGGG CCGCCGTGGAGCGTTTCAACAATGAGCAGAGACTCCGATTACTGCAGTTCGTCACAGGAA CATCGAGTGTGCCCTACGAAGGCTTTGCAGCCCTTCGAGGAAGCAACGGGCTTCGGCGTT TCTGCATAGAGAAATGGGGGAAAATCACGTCTCTCCCCAGGGCACACACGTGCTTCAATC GACTGGACCTTCCACCGTATCCCTCATACTCCATGTTGTATGAAAAGCTGTTAACGGCAG TCGAAGAAACCAGCACCTTTGGACTTGAATGAGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 519-638, + strand, RNAz p=0.582073 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 519-638, + strand, RNAz p=0.582073 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 175-329, gnl|bosTau2|chr4 (42670319-42670473) | |
| 175-329, gnl|canFam2|chr18 (9645838-9645648) | |
| 175-329, gnl|danRer3|chr2 (44395726-44395562) | |
| 175-329, gnl|dasNov1|scaffold_46057 (1256-1446) | |
| 175-329, gnl|echTel1|scaffold_277571 (43207-43015) | |
| 175-329, gnl|fr1|chrUn (276613613-276613432) | |
| 175-329, gnl|galGal2|chr2 (50574461-50574646) | |
| 175-329, gnl|hg17|chr7 (43363260-43363448) | |
| 175-329, gnl|Hg17|chr7 (43363279-43363433) | |
| 175-329, gnl|loxAfr1|scaffold_58059 (6084-6273) | |
| 175-329, gnl|mm7|chr13 (13611717-13611532) | |
| 175-329, gnl|Mm7|chr13 (13611701-13611547) | |
| 175-329, gnl|monDom2|scaffold_142 (381187-381011) | |
| 175-329, gnl|oryCun1|scaffold_182803 (14488-14297) | |
| 175-329, gnl|panTro1|chr6 (40874784-40874596) | |
| 175-329, gnl|rheMac2|chr3 (82711371-82711183) | |
| 175-329, gnl|rn3|chr17 (59255282-59255472) | |
| 175-329, gnl|tetNig1|chrUn_random (52190571-52190402) | |
| 175-329, gnl|xenTro1|scaffold_616 (35299-35474) | |
| 440-641, gnl|bosTau2|chr4 (42676553-42676754) | |
| 440-641, gnl|Hg17|chr7 (43367429-43367630) | |
| 440-641, gnl|Mm7|chr13 (13600320-13600119) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 175-329, gnl|bosTau2|chr4 (42670319-42670473) | |
| 175-329, gnl|canFam2|chr18 (9645838-9645648) | |
| 175-329, gnl|danRer3|chr2 (44395726-44395562) | |
| 175-329, gnl|dasNov1|scaffold_46057 (1256-1446) | |
| 175-329, gnl|echTel1|scaffold_277571 (43207-43015) | |
| 175-329, gnl|fr1|chrUn (276613613-276613432) | |
| 175-329, gnl|galGal2|chr2 (50574461-50574646) | |
| 175-329, gnl|hg17|chr7 (43363260-43363448) | |
| 175-329, gnl|Hg17|chr7 (43363279-43363433) | |
| 175-329, gnl|loxAfr1|scaffold_58059 (6084-6273) | |
| 175-329, gnl|mm7|chr13 (13611717-13611532) | |
| 175-329, gnl|Mm7|chr13 (13611701-13611547) | |
| 175-329, gnl|monDom2|scaffold_142 (381187-381011) | |
| 175-329, gnl|oryCun1|scaffold_182803 (14488-14297) | |
| 175-329, gnl|panTro1|chr6 (40874784-40874596) | |
| 175-329, gnl|rheMac2|chr3 (82711371-82711183) | |
| 175-329, gnl|rn3|chr17 (59255282-59255472) | |
| 175-329, gnl|tetNig1|chrUn_random (52190571-52190402) | |
| 175-329, gnl|xenTro1|scaffold_616 (35299-35474) | |
| 440-641, gnl|bosTau2|chr4 (42676553-42676754) | |
| 440-641, gnl|Hg17|chr7 (43367429-43367630) | |
| 440-641, gnl|Mm7|chr13 (13600320-13600119) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |