Non-Coding RNA Search

Ss1.1-Pig2-78G06.5

Sequence:


               
               CCCGAGCTCGTGCGGTCTCCCATGATACCCCTGCCCATGCCCAAGAAGCTGCGGTTCAAC
ATCACCCCTGAGATCAAGAGCGACATCGAGAAGGCCAAGCAGAATCTCAGCATCATGATC
CATGACCTGAACGTCGCGGTGTTCGTGTTCCACCACTTTGGAAAGGACTTCCCCAAGTCG
GAGAAATTGAGCCCGGACGCCTTCATCCAGATGGCCCTCCAGCTGGCCTACTACAGGATC
TACGGGCAGGCGTGCGCCACCTACGAGAGCGCCTCCCTGCGCATGTTCCACCTGGGCCGC
ACCGACACCATCCGCTCGGCCTCCATGGACTCGCTGACCTTCGTCAAGGCCATGGGCGAC
CCTAATGTGACGGAGCACCAGAAGGTGGAGCTGCTGCGAAAGGCCGTGCAGGCCCACCGA
GCCTACACCGACCTGGCCATCTGCGGGAAGGCCTTCGACCGGCACCTGCTGGGCCTGAAG
CTGCAGGCCATCGAAGACCTGGTCAGCATGCCCGACATCTTCATGGACACCTCCTACGCC
ATCGCCATGCACTTCAACCTCTCCACCAGCCAGGTCCCCGCCAAGACAGACTGTGTCATG
TTCTTTGGGCCTGTGGTCCCAGATGGCTACGGCGTCTGCTATAACCCCATGGAGTCGCAC
ATCAACTTCTCCGTGTCGGCCTACAACAGCTGTGCCGAGACCAACGCCGTCCGCCTGGCG
CACTACCTGGAGCAGGCGCTCCTGGACATGCGCGCCCTGCTGCAGAGCCACCCCCGGGCC
AAGCTCTGAGCCTCGTTGCTCAGACCCGCCGATGCCACGGCCAAGCCACCATGGGAGGGC
CACCCGCCGGGCTCTGCTCCTTCACTCCCCCGCCCCCTGGGCCTGACACATCTGACCCAG
TTGGGGACAAGCACCCCCCAGTGGAGCCTGCAGGCCCGAGCCAAGTGCCTTCCGCGGGCC
CTCACCAGCACCCTCTGGGGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGAGCTCGTGCGGTCTCCCATGATACCCCTGCCCATGCCCAAGAAGCTGCGGTTCAAC
ATCACCCCTGAGATCAAGAGCGACATCGAGAAGGCCAAGCAGAATCTCAGCATCATGATC
CATGACCTGAACGTCGCGGTGTTCGTGTTCCACCACTTTGGAAAGGACTTCCCCAAGTCG
GAGAAATTGAGCCCGGACGCCTTCATCCAGATGGCCCTCCAGCTGGCCTACTACAGGATC
TACGGGCAGGCGTGCGCCACCTACGAGAGCGCCTCCCTGCGCATGTTCCACCTGGGCCGC
ACCGACACCATCCGCTCGGCCTCCATGGACTCGCTGACCTTCGTCAAGGCCATGGGCGAC
CCTAATGTGACGGAGCACCAGAAGGTGGAGCTGCTGCGAAAGGCCGTGCAGGCCCACCGA
GCCTACACCGACCTGGCCATCTGCGGGAAGGCCTTCGACCGGCACCTGCTGGGCCTGAAG
CTGCAGGCCATCGAAGACCTGGTCAGCATGCCCGACATCTTCATGGACACCTCCTACGCC
ATCGCCATGCACTTCAACCTCTCCACCAGCCAGGTCCCCGCCAAGACAGACTGTGTCATG
TTCTTTGGGCCTGTGGTCCCAGATGGCTACGGCGTCTGCTATAACCCCATGGAGTCGCAC
ATCAACTTCTCCGTGTCGGCCTACAACAGCTGTGCCGAGACCAACGCCGTCCGCCTGGCG
CACTACCTGGAGCAGGCGCTCCTGGACATGCGCGCCCTGCTGCAGAGCCACCCCCGGGCC
AAGCTCTGAGCCTCGTTGCTCAGACCCGCCGATGCCACGGCCAAGCCACCATGGGAGGGC
CACCCGCCGGGCTCTGCTCCTTCACTCCCCCGCCCCCTGGGCCTGACACATCTGACCCAG
TTGGGGACAAGCACCCCCCAGTGGAGCCTGCAGGCCCGAGCCAAGTGCCTTCCGCGGGCC
CTCACCAGCACCCTCTGGGGCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61861424|ref|XP_590507.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861424|ref|XP_590507.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               771-875, - strand, RNAz p=0.993624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-875, - strand, RNAz p=0.993624

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-113, gnl|bosTau2|chr11 (78883563-78883451)
               

               
               1-113, gnl|Hg17|chr9 (128940476-128940364)
               

               
               1-113, gnl|Mm7|chr2 (30412808-30412696)
               


               
               234-373, gnl|bosTau2|chr11 (78883094-78882955)
               

               
               234-373, gnl|Hg17|chr9 (128939984-128939845)
               

               
               234-373, gnl|Mm7|chr2 (30412387-30412248)
               


               
               571-973, gnl|bosTau2|chr11 (78880936-78880540)
               

               
               571-973, gnl|Hg17|chr9 (128937448-128937032)
               

               
               571-973, gnl|Mm7|chr2 (30410107-30409721)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-113, gnl|bosTau2|chr11 (78883563-78883451)
               

               
               1-113, gnl|Hg17|chr9 (128940476-128940364)
               

               
               1-113, gnl|Mm7|chr2 (30412808-30412696)
               


               
               234-373, gnl|bosTau2|chr11 (78883094-78882955)
               

               
               234-373, gnl|Hg17|chr9 (128939984-128939845)
               

               
               234-373, gnl|Mm7|chr2 (30412387-30412248)
               


               
               571-973, gnl|bosTau2|chr11 (78880936-78880540)
               

               
               571-973, gnl|Hg17|chr9 (128937448-128937032)
               

               
               571-973, gnl|Mm7|chr2 (30410107-30409721)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               med (0.116252)

	1-113, gnl\|bosTau2\|chr11 (78883563-78883451)
	1-113, gnl\|Hg17\|chr9 (128940476-128940364)
	1-113, gnl\|Mm7\|chr2 (30412808-30412696)

	234-373, gnl\|bosTau2\|chr11 (78883094-78882955)
	234-373, gnl\|Hg17\|chr9 (128939984-128939845)
	234-373, gnl\|Mm7\|chr2 (30412387-30412248)

	571-973, gnl\|bosTau2\|chr11 (78880936-78880540)
	571-973, gnl\|Hg17\|chr9 (128937448-128937032)
	571-973, gnl\|Mm7\|chr2 (30410107-30409721)