Non-Coding RNA Search

Ss1.1-Pig2-78G21.5

Sequence:


               
               CCTGGGTGAGACCCGGAGGTGGTGGGCCTGGGGAGGTGGGGCCGGGGCGTTTCGGGGGCG
GGGCGGGGCTGCGAGCGCCAGGTCTCCGCCCCAAGCACACCCTTCCGGCCTCAGCTCCTG
CCCCGCGTACCCCCAGGCTGCGCCTTCCCCTATGCCGCCTACTCCATGCCGGCTTCCTGG
CTGCACAGCCGCCTGCACCAGCTCTTTGTCCCCACCGCCGCACTCAATTCCTTCCTGTGC
ACCGGCCTCTCCTGCTACTCCCGATGGGGTCGCTTGCAGAGGAGTCATGTGCCCTAAGGG
CTTTCATAGCCACTAAGCTACACTGACTTTCCATCTTGGGAAAAGGTCCTCTGCCCTCCT
CTGACCCTCACCCTAGCAGTCCTCTCACCTCCCAGGTTCCCGGAGCTAGAAAGCCCTGGG
CTCAGTAAGATCCTCCGCACAGCCGCCTTCACCTATCCCTTTCTGTTTGACAACCTCCCA
CTCTTCTATCGGCTCGGACTGTGCTGGGGCAGGGGTCCGAGCTGTGGGCAGGAGGCGTTG
AGCACCAGCCACTGCTACCACCTCTTCTGCGCACTGCTCACTGGCTTCCTCTTCGCCTCC
CACCTGCCTGAGCGGCTGGCACCAGGACGCTTTGACTACATTGGCCACAGCCACCAGCTG
TTCCACATCTGTGCAGTGCTGGGCACCCACTTCCAGCTGGAGGCGGTGTTGGCTGATATG
GGATCTCGCCGAGCCTGGCTGGCCACACAGGACCTGCCCCTGGGCCTGATGGGCACGATG
GCCACACTGGGCTTGGTGGTAGCTGGGAACCTGCTCATCATCACCGCTTTCACAGCTTCC
CTATTTCGGGCCCCCAGTACATGCCCCCTGCTGCAGGGTGGCCCACTGGAGGAGGGTACA
AAGGCCAAACTACAGTGAGGCTCCAGCTCTGAGCCTACCCTGGAGGGAGGCAGAAGGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGTGAGACCCGGAGGTGGTGGGCCTGGGGAGGTGGGGCCGGGGCGTTTCGGGGGCG
GGGCGGGGCTGCGAGCGCCAGGTCTCCGCCCCAAGCACACCCTTCCGGCCTCAGCTCCTG
CCCCGCGTACCCCCAGGCTGCGCCTTCCCCTATGCCGCCTACTCCATGCCGGCTTCCTGG
CTGCACAGCCGCCTGCACCAGCTCTTTGTCCCCACCGCCGCACTCAATTCCTTCCTGTGC
ACCGGCCTCTCCTGCTACTCCCGATGGGGTCGCTTGCAGAGGAGTCATGTGCCCTAAGGG
CTTTCATAGCCACTAAGCTACACTGACTTTCCATCTTGGGAAAAGGTCCTCTGCCCTCCT
CTGACCCTCACCCTAGCAGTCCTCTCACCTCCCAGGTTCCCGGAGCTAGAAAGCCCTGGG
CTCAGTAAGATCCTCCGCACAGCCGCCTTCACCTATCCCTTTCTGTTTGACAACCTCCCA
CTCTTCTATCGGCTCGGACTGTGCTGGGGCAGGGGTCCGAGCTGTGGGCAGGAGGCGTTG
AGCACCAGCCACTGCTACCACCTCTTCTGCGCACTGCTCACTGGCTTCCTCTTCGCCTCC
CACCTGCCTGAGCGGCTGGCACCAGGACGCTTTGACTACATTGGCCACAGCCACCAGCTG
TTCCACATCTGTGCAGTGCTGGGCACCCACTTCCAGCTGGAGGCGGTGTTGGCTGATATG
GGATCTCGCCGAGCCTGGCTGGCCACACAGGACCTGCCCCTGGGCCTGATGGGCACGATG
GCCACACTGGGCTTGGTGGTAGCTGGGAACCTGCTCATCATCACCGCTTTCACAGCTTCC
CTATTTCGGGCCCCCAGTACATGCCCCCTGCTGCAGGGTGGCCCACTGGAGGAGGGTACA
AAGGCCAAACTACAGTGAGGCTCCAGCTCTGAGCCTACCCTGGAGGGAGGCAGAAGGCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61879655|ref|XP_594653.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879655|ref|XP_594653.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               269-492, gnl|bosTau2|chr3 (10396828-10397062)
               

               
               269-492, gnl|Hg17|chr1 (153028250-153028006)
               


               
               643-954, gnl|bosTau2|chr3 (10397729-10398040)
               

               
               643-954, gnl|Hg17|chr1 (153027268-153026958)
               

               
               643-954, gnl|Mm7|chr3 (88490604-88490905)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-492, gnl|bosTau2|chr3 (10396828-10397062)
               

               
               269-492, gnl|Hg17|chr1 (153028250-153028006)
               


               
               643-954, gnl|bosTau2|chr3 (10397729-10398040)
               

               
               643-954, gnl|Hg17|chr1 (153027268-153026958)
               

               
               643-954, gnl|Mm7|chr3 (88490604-88490905)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               csp (0.161186)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               csp (0.161186)

	269-492, gnl\|bosTau2\|chr3 (10396828-10397062)
	269-492, gnl\|Hg17\|chr1 (153028250-153028006)

	643-954, gnl\|bosTau2\|chr3 (10397729-10398040)
	643-954, gnl\|Hg17\|chr1 (153027268-153026958)
	643-954, gnl\|Mm7\|chr3 (88490604-88490905)