Ss1.1-Pig2-79H13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGAGGAGGGTGAAGAAATAGAGAACGGACCCTGGTCTTTGAGGATGGGGGCAGGGAA AGCCAGAGGAGCTGCCGGGAGAGCCTTACGGCGGGGACATTCTGGGAACCTCAGCCTCGG TCTCTCAGCCACAATCCTCTCCAGGTCTGTGACAGCCTTGGGCGGCGACACCTCGCTGCA TGTTCCCTCTGTGACTTCTGCTCCCTGAAGCTGGAGCAGTGCCACTCAGAGACCAACCTG CAGCGGCAGCAGTGTGACAACTCCCACAAAACACCCTTCATCAGCCCCCTGCTGGCATCC CAGAGCATGTCCATTGGCACCCAGATAGGGACCCTAAAATCGGGCCGCTTCTACGGGCTG GATTTGTACGGCGGGCTCCGCATGGACTTCTGGTGCGCCCGGCTGGCTACCAAGGGCTGC GAAGACAACCGAGTGGCCAGCTGGCTCCAGACTGAGTTCCTCAGCTTCCAGGATGGGGAC TTCCCCACCAAGATTTGTGACACAGAATACGTGCAGTACCCGAACTACTGTGCCTTCAAA AGCCAGCAGTGCATGATGAGAAACCGGGATCGGAAGGTGTCTCGCATGCGATGTCTGCAG AATGAGACATACACCGTCCTGACCCAGGCCAAGAGTGAAGACCTCGTGCTTCGATGGAGC CAGGAGTTCAGCACCTTGACTCTCGGCCAAGCTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGAGGAGGGTGAAGAAATAGAGAACGGACCCTGGTCTTTGAGGATGGGGGCAGGGAA AGCCAGAGGAGCTGCCGGGAGAGCCTTACGGCGGGGACATTCTGGGAACCTCAGCCTCGG TCTCTCAGCCACAATCCTCTCCAGGTCTGTGACAGCCTTGGGCGGCGACACCTCGCTGCA TGTTCCCTCTGTGACTTCTGCTCCCTGAAGCTGGAGCAGTGCCACTCAGAGACCAACCTG CAGCGGCAGCAGTGTGACAACTCCCACAAAACACCCTTCATCAGCCCCCTGCTGGCATCC CAGAGCATGTCCATTGGCACCCAGATAGGGACCCTAAAATCGGGCCGCTTCTACGGGCTG GATTTGTACGGCGGGCTCCGCATGGACTTCTGGTGCGCCCGGCTGGCTACCAAGGGCTGC GAAGACAACCGAGTGGCCAGCTGGCTCCAGACTGAGTTCCTCAGCTTCCAGGATGGGGAC TTCCCCACCAAGATTTGTGACACAGAATACGTGCAGTACCCGAACTACTGTGCCTTCAAA AGCCAGCAGTGCATGATGAGAAACCGGGATCGGAAGGTGTCTCGCATGCGATGTCTGCAG AATGAGACATACACCGTCCTGACCCAGGCCAAGAGTGAAGACCTCGTGCTTCGATGGAGC CAGGAGTTCAGCACCTTGACTCTCGGCCAAGCTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 95-244, + strand, RNAz p=0.929774 | |
| 147-306, - strand, RNAz p=0.610014 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 95-244, + strand, RNAz p=0.929774 | |
| 147-306, - strand, RNAz p=0.610014 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 36-334, gnl|bosTau2|chr5 (60554566-60554874) | |
| 36-334, gnl|canFam2|chr27 (41414201-41413887) | |
| 36-334, gnl|dasNov1|scaffold_83672 (6925-6636) | |
| 36-334, gnl|echTel1|scaffold_303792 (4433-4752) | |
| 36-334, gnl|galGal2|chr1 (71132392-71132715) | |
| 36-334, gnl|hg17|chr12 (6619689-6620005) | |
| 36-334, gnl|Hg17|chr12 (6620102-6619764) | |
| 36-334, gnl|mm7|chr6 (125086687-125086386) | |
| 36-334, gnl|Mm7|chr6 (125086292-125086625) | |
| 36-334, gnl|monDom2|scaffold_31 (15038023-15038372) | |
| 36-334, gnl|oryCun1|scaffold_203664 (56893-56612) | |
| 36-334, gnl|panTro1|chr10 (7156326-7156642) | |
| 36-334, gnl|rheMac2|chr11 (6808572-6808889) | |
| 36-334, gnl|rn3|chr4 (161426087-161425782) | |
| 575-696, gnl|bosTau2|chr5 (60556859-60556980) | |
| 575-696, gnl|canFam2|chr27 (41416391-41416093) | |
| 575-696, gnl|dasNov1|scaffold_174803 (990-696) | |
| 575-696, gnl|hg17|chr12 (6617558-6617845) | |
| 575-696, gnl|Hg17|chr12 (6617833-6617712) | |
| 575-696, gnl|loxAfr1|scaffold_121547 (9-308) | |
| 575-696, gnl|mm7|chr6 (125088840-125088552) | |
| 575-696, gnl|Mm7|chr6 (125088561-125088682) | |
| 575-696, gnl|monDom2|scaffold_31 (15033134-15033484) | |
| 575-696, gnl|panTro1|chr10 (7154194-7154481) | |
| 575-696, gnl|rheMac2|chr11 (6806411-6806707) | |
| 575-696, gnl|rn3|chr4 (161428182-161427887) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-334, gnl|bosTau2|chr5 (60554566-60554874) | |
| 36-334, gnl|canFam2|chr27 (41414201-41413887) | |
| 36-334, gnl|dasNov1|scaffold_83672 (6925-6636) | |
| 36-334, gnl|echTel1|scaffold_303792 (4433-4752) | |
| 36-334, gnl|galGal2|chr1 (71132392-71132715) | |
| 36-334, gnl|hg17|chr12 (6619689-6620005) | |
| 36-334, gnl|Hg17|chr12 (6620102-6619764) | |
| 36-334, gnl|mm7|chr6 (125086687-125086386) | |
| 36-334, gnl|Mm7|chr6 (125086292-125086625) | |
| 36-334, gnl|monDom2|scaffold_31 (15038023-15038372) | |
| 36-334, gnl|oryCun1|scaffold_203664 (56893-56612) | |
| 36-334, gnl|panTro1|chr10 (7156326-7156642) | |
| 36-334, gnl|rheMac2|chr11 (6808572-6808889) | |
| 36-334, gnl|rn3|chr4 (161426087-161425782) | |
| 575-696, gnl|bosTau2|chr5 (60556859-60556980) | |
| 575-696, gnl|canFam2|chr27 (41416391-41416093) | |
| 575-696, gnl|dasNov1|scaffold_174803 (990-696) | |
| 575-696, gnl|hg17|chr12 (6617558-6617845) | |
| 575-696, gnl|Hg17|chr12 (6617833-6617712) | |
| 575-696, gnl|loxAfr1|scaffold_121547 (9-308) | |
| 575-696, gnl|mm7|chr6 (125088840-125088552) | |
| 575-696, gnl|Mm7|chr6 (125088561-125088682) | |
| 575-696, gnl|monDom2|scaffold_31 (15033134-15033484) | |
| 575-696, gnl|panTro1|chr10 (7154194-7154481) | |
| 575-696, gnl|rheMac2|chr11 (6806411-6806707) | |
| 575-696, gnl|rn3|chr4 (161428182-161427887) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |