Non-Coding RNA Search

Ss1.1-Pig2-79J04.5

Sequence:


               
               CTATGTGGCTATGTTGGTGCGTTGCTGGCTATCAGAAGACAGTACCAAAGCATCGTTCCT
GCACTTTATGAGTACACAAGTCAGCTGTTAAAACGTCGGAAGGTGTCAGTGCCTTTAAAA
ATTGAACACCTTTCTGAGGAATTGGATGCGTGGAGAGCTTGCACACAGTCCACCAACCCG
GCCCCGTATTTCTCCTTGAAGATGGGAAATCCACGATCTCCTTGAATGATGCTTTGATGT
GGGCAAAGGTGAACCCATTCTCACCTTTGGGAACTGGCCTACGACTCAACCCATTTTGAT
AGAAAGTTTTTTCCTCGGGATGATTGTTTTTTTAAAGACCTTTTGTGGTTAGTATTACCT
TAACCTTTGTTATCCAAGAGCCAAAGCTTGGGAGGAGGTGAGGGGGCCGTGGGGACTCAC
ACTTGATTTTATTCATTAACTTCAGAAAATAAAATATTTATATAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGTGGCTATGTTGGTGCGTTGCTGGCTATCAGAAGACAGTACCAAAGCATCGTTCCT
GCACTTTATGAGTACACAAGTCAGCTGTTAAAACGTCGGAAGGTGTCAGTGCCTTTAAAA
ATTGAACACCTTTCTGAGGAATTGGATGCGTGGAGAGCTTGCACACAGTCCACCAACCCG
GCCCCGTATTTCTCCTTGAAGATGGGAAATCCACGATCTCCTTGAATGATGCTTTGATGT
GGGCAAAGGTGAACCCATTCTCACCTTTGGGAACTGGCCTACGACTCAACCCATTTTGAT
AGAAAGTTTTTTCCTCGGGATGATTGTTTTTTTAAAGACCTTTTGTGGTTAGTATTACCT
TAACCTTTGTTATCCAAGAGCCAAAGCTTGGGAGGAGGTGAGGGGGCCGTGGGGACTCAC
ACTTGATTTTATTCATTAACTTCAGAAAATAAAATATTTATATAATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47182706|emb|CAG14662.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47182706|emb|CAG14662.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               180-468, gnl|bosTau2|chr27 (2144917-2144629)
               

               
               180-468, gnl|Hg17|chr4 (177475760-177476059)
               

               
               180-468, gnl|Mm7|chr8 (53398841-53398554)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-468, gnl|bosTau2|chr27 (2144917-2144629)
               

               
               180-468, gnl|Hg17|chr4 (177475760-177476059)
               

               
               180-468, gnl|Mm7|chr8 (53398841-53398554)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               aor (0.195274)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	180-468, gnl\|bosTau2\|chr27 (2144917-2144629)
	180-468, gnl\|Hg17\|chr4 (177475760-177476059)
	180-468, gnl\|Mm7\|chr8 (53398841-53398554)