Ss1.1-Pig2-79M01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTTGTGAAGTTGCTGGCCAGCAAGTGGAGTGAAGACTGCAGAAGGAGATAAAAAAGAA AGAGGGCAGCAAAAGATTTGTCCTGGACACCCAGAAACTCACGGTCCCCCACTGAAAACC AAATCCCCTGGAAGCCTGCAGAGACACAAAGACAGCACGAGAAACAGAGATAAATACACT CAGCCTCAGGAAACTCCTCTTCTCTCTCTCTCTCTTTCCCTCTCTCTCTCACCTCCCAGC CCTCTCCCTACCCTAGTCCTCTGGTCTCCAAACTCCTAGTACCTTGTGCTCCCTCCGGAA ATACCATGTTGGTCTTCATCCTCCTGCTAAAGGTGATGTGGATCCTGGCTGCAGAAGACG GTCAACACTGGACATATGAGGGCCCACACGGTCAAGACCATTGGCCAGCCTCTTACCCTG AATGTGGAAGCAATGCCCAGTCCCCCATCAATATCCAGACAGACAGTGTGACTTTTGACC CTGAGTTGCTACCTCTGCAACCCCATGGATATGAACAGCCTGGCACCGAGCCTTTGGACC TGCACAATAATGGCCACACAGTGCAACTCTCACTGCCTCCTACCCTACATCTGGAAGGAC TGCCCCGAAAATATGTAGCTGCCCAGCTCCACCTGCACTGGGGTCAGAAAGGATCCCCAG GGGGCTCAGAGCACAAGATCAACGGCGAAGCTACCGCTGCAGAGCTCCACATCGTACATT ATGATTCTGAGTCCTACGCTAGCTTGAGTGAAGCTGCTCAGCAGCCCCAAGGCCTGGCTG TCTTGGGCATCCTCGTTGAGGTGGGCGAGACTGAAAACCCAGCTTATGAACACATTCTGA GTCACCTGCATGAAATTAGGCACAAAGATCAGAGGACCTCAGTGCCCCCCTTCAATGTGA GAGGGCTGCTCCCGCCCCTGCTGGCGCAGTTCTTCCGTTACAATGGCTCACTCACTACAC CGCCCTGCTACCAGAGTGTGCTCTGGACAGTCTTCAATCGAAGGGCCCAGATTTCAATGG GACAGCTGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTTGTGAAGTTGCTGGCCAGCAAGTGGAGTGAAGACTGCAGAAGGAGATAAAAAAGAA AGAGGGCAGCAAAAGATTTGTCCTGGACACCCAGAAACTCACGGTCCCCCACTGAAAACC AAATCCCCTGGAAGCCTGCAGAGACACAAAGACAGCACGAGAAACAGAGATAAATACACT CAGCCTCAGGAAACTCCTCTTCTCTCTCTCTCTCTTTCCCTCTCTCTCTCACCTCCCAGC CCTCTCCCTACCCTAGTCCTCTGGTCTCCAAACTCCTAGTACCTTGTGCTCCCTCCGGAA ATACCATGTTGGTCTTCATCCTCCTGCTAAAGGTGATGTGGATCCTGGCTGCAGAAGACG GTCAACACTGGACATATGAGGGCCCACACGGTCAAGACCATTGGCCAGCCTCTTACCCTG AATGTGGAAGCAATGCCCAGTCCCCCATCAATATCCAGACAGACAGTGTGACTTTTGACC CTGAGTTGCTACCTCTGCAACCCCATGGATATGAACAGCCTGGCACCGAGCCTTTGGACC TGCACAATAATGGCCACACAGTGCAACTCTCACTGCCTCCTACCCTACATCTGGAAGGAC TGCCCCGAAAATATGTAGCTGCCCAGCTCCACCTGCACTGGGGTCAGAAAGGATCCCCAG GGGGCTCAGAGCACAAGATCAACGGCGAAGCTACCGCTGCAGAGCTCCACATCGTACATT ATGATTCTGAGTCCTACGCTAGCTTGAGTGAAGCTGCTCAGCAGCCCCAAGGCCTGGCTG TCTTGGGCATCCTCGTTGAGGTGGGCGAGACTGAAAACCCAGCTTATGAACACATTCTGA GTCACCTGCATGAAATTAGGCACAAAGATCAGAGGACCTCAGTGCCCCCCTTCAATGTGA GAGGGCTGCTCCCGCCCCTGCTGGCGCAGTTCTTCCGTTACAATGGCTCACTCACTACAC CGCCCTGCTACCAGAGTGTGCTCTGGACAGTCTTCAATCGAAGGGCCCAGATTTCAATGG GACAGCTGGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-352, gnl|bosTau2|chr3 (17198393-17198044) | |
| 1-352, gnl|canFam2|chr17 (62583872-62584308) | |
| 1-352, gnl|dasNov1|scaffold_20850 (8672-8374) | |
| 1-352, gnl|echTel1|scaffold_312059 (41909-42300) | |
| 1-352, gnl|hg17|chr1 (147043204-147043616) | |
| 1-352, gnl|Hg17|chr1 (147043294-147043643) | |
| 1-352, gnl|loxAfr1|scaffold_80251 (883-447) | |
| 1-352, gnl|mm7|chr3 (95778696-95778307) | |
| 1-352, gnl|Mm7|chr3 (95778604-95778278) | |
| 1-352, gnl|monDom2|scaffold_44 (3482488-3483000) | |
| 1-352, gnl|oryCun1|scaffold_198586 (35392-35808) | |
| 1-352, gnl|panTro1|chr1 (128761753-128762163) | |
| 1-352, gnl|rheMac2|chr1 (128631445-128631863) | |
| 1-352, gnl|rn3|chr2 (190653342-190652966) | |
| 381-561, gnl|bosTau2|chr3 (17194904-17194724) | |
| 381-561, gnl|Hg17|chr1 (147046930-147047110) | |
| 381-561, gnl|Mm7|chr3 (95775223-95775043) | |
| 866-1028, gnl|bosTau2|chr3 (17193180-17193018) | |
| 866-1028, gnl|canFam2|chr17 (62588623-62588787) | |
| 866-1028, gnl|danRer3|chr25 (22474651-22474487) | |
| 866-1028, gnl|dasNov1|scaffold_20850 (3234-3070) | |
| 866-1028, gnl|echTel1|scaffold_312059 (46807-46971) | |
| 866-1028, gnl|fr1|chrUn (157807731-157807855) | |
| 866-1028, gnl|galGal2|chrZ_random (8505666-8505502) | |
| 866-1028, gnl|hg17|chr1 (147048512-147048676) | |
| 866-1028, gnl|Hg17|chr1 (147048512-147048674) | |
| 866-1028, gnl|loxAfr1|scaffold_13317 (47184-47020) | |
| 866-1028, gnl|mm7|chr3 (95773542-95773374) | |
| 866-1028, gnl|Mm7|chr3 (95773540-95773374) | |
| 866-1028, gnl|monDom2|scaffold_44 (3488674-3488838) | |
| 866-1028, gnl|oryCun1|scaffold_198586 (39908-40072) | |
| 866-1028, gnl|panTro1|chr1 (128767037-128767201) | |
| 866-1028, gnl|rheMac2|chr1 (128636678-128636842) | |
| 866-1028, gnl|rn3|chr2 (190648201-190648037) | |
| 866-1028, gnl|tetNig1|chr8 (8788545-8788709) | |
| 866-1028, gnl|xenTro1|scaffold_433 (576493-576652) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-352, gnl|bosTau2|chr3 (17198393-17198044) | |
| 1-352, gnl|canFam2|chr17 (62583872-62584308) | |
| 1-352, gnl|dasNov1|scaffold_20850 (8672-8374) | |
| 1-352, gnl|echTel1|scaffold_312059 (41909-42300) | |
| 1-352, gnl|hg17|chr1 (147043204-147043616) | |
| 1-352, gnl|Hg17|chr1 (147043294-147043643) | |
| 1-352, gnl|loxAfr1|scaffold_80251 (883-447) | |
| 1-352, gnl|mm7|chr3 (95778696-95778307) | |
| 1-352, gnl|Mm7|chr3 (95778604-95778278) | |
| 1-352, gnl|monDom2|scaffold_44 (3482488-3483000) | |
| 1-352, gnl|oryCun1|scaffold_198586 (35392-35808) | |
| 1-352, gnl|panTro1|chr1 (128761753-128762163) | |
| 1-352, gnl|rheMac2|chr1 (128631445-128631863) | |
| 1-352, gnl|rn3|chr2 (190653342-190652966) | |
| 381-561, gnl|bosTau2|chr3 (17194904-17194724) | |
| 381-561, gnl|Hg17|chr1 (147046930-147047110) | |
| 381-561, gnl|Mm7|chr3 (95775223-95775043) | |
| 866-1028, gnl|bosTau2|chr3 (17193180-17193018) | |
| 866-1028, gnl|canFam2|chr17 (62588623-62588787) | |
| 866-1028, gnl|danRer3|chr25 (22474651-22474487) | |
| 866-1028, gnl|dasNov1|scaffold_20850 (3234-3070) | |
| 866-1028, gnl|echTel1|scaffold_312059 (46807-46971) | |
| 866-1028, gnl|fr1|chrUn (157807731-157807855) | |
| 866-1028, gnl|galGal2|chrZ_random (8505666-8505502) | |
| 866-1028, gnl|hg17|chr1 (147048512-147048676) | |
| 866-1028, gnl|Hg17|chr1 (147048512-147048674) | |
| 866-1028, gnl|loxAfr1|scaffold_13317 (47184-47020) | |
| 866-1028, gnl|mm7|chr3 (95773542-95773374) | |
| 866-1028, gnl|Mm7|chr3 (95773540-95773374) | |
| 866-1028, gnl|monDom2|scaffold_44 (3488674-3488838) | |
| 866-1028, gnl|oryCun1|scaffold_198586 (39908-40072) | |
| 866-1028, gnl|panTro1|chr1 (128767037-128767201) | |
| 866-1028, gnl|rheMac2|chr1 (128636678-128636842) | |
| 866-1028, gnl|rn3|chr2 (190648201-190648037) | |
| 866-1028, gnl|tetNig1|chr8 (8788545-8788709) | |
| 866-1028, gnl|xenTro1|scaffold_433 (576493-576652) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) |