Non-Coding RNA Search

Ss1.1-Pig2-79M02.5

Sequence:


               
               CAAACGGACCGAGATCATCAGCCGCTCCTGGTTCCCCTCCACTTCCACCAGCACCAGCAG
CACCAGCAAAGCCAGCAGTGTCCTGAAGAAGCTGGCCCAGAACCGCAGATCTGTTCCCGC
CGCCAGCTCCCCCATCACCGTGGGGCACCTGGGCATTGTGCGGCGGCGGTCCCGGGAGGT
TCCAGAAAGCCCCCAGCACATGGCTGAGACCCTCAAGTCTGGGGAGCCACGGGTGCCAGC
GGGGATGGCCCAGGACAGACCCACATCCCCCCAAGACTGCTCTCAGGAGACGACTGAGCT
CCCCAAAAACAGTGGGCCACCGGGGCAGGAGGGGAGCTGTGGGGACAGGCCCCAGACCCC
ACCAGGCACTTCCCAGGAAGCAGCCAACCCCCAGGACAAAGCACAGCCCTGTGGCCTCAG
CTCCTCCCTCGTAGCTGACTACTCCGGTTCTGAGAGTGAGTGATTCCCAGGACTGGACCC
AGCCCGCCCCAGAGGCCAAGACACAGAGGAGGTGCCTCACTGGCTGCAGGCCCGCTGGCC
CACCAGCCCACAGAGAGCTCAGTCACCGCCCCCTCCCCAGACCTCACCTCGAAGTGATGC
TGTTGTCTATTTATTTGGTCCTGGAGAGGGTGTTTGTGCCTTGTGGGACCCCCGACCTCC
CAGCATTAAAACCCTGCTTCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACGGACCGAGATCATCAGCCGCTCCTGGTTCCCCTCCACTTCCACCAGCACCAGCAG
CACCAGCAAAGCCAGCAGTGTCCTGAAGAAGCTGGCCCAGAACCGCAGATCTGTTCCCGC
CGCCAGCTCCCCCATCACCGTGGGGCACCTGGGCATTGTGCGGCGGCGGTCCCGGGAGGT
TCCAGAAAGCCCCCAGCACATGGCTGAGACCCTCAAGTCTGGGGAGCCACGGGTGCCAGC
GGGGATGGCCCAGGACAGACCCACATCCCCCCAAGACTGCTCTCAGGAGACGACTGAGCT
CCCCAAAAACAGTGGGCCACCGGGGCAGGAGGGGAGCTGTGGGGACAGGCCCCAGACCCC
ACCAGGCACTTCCCAGGAAGCAGCCAACCCCCAGGACAAAGCACAGCCCTGTGGCCTCAG
CTCCTCCCTCGTAGCTGACTACTCCGGTTCTGAGAGTGAGTGATTCCCAGGACTGGACCC
AGCCCGCCCCAGAGGCCAAGACACAGAGGAGGTGCCTCACTGGCTGCAGGCCCGCTGGCC
CACCAGCCCACAGAGAGCTCAGTCACCGCCCCCTCCCCAGACCTCACCTCGAAGTGATGC
TGTTGTCTATTTATTTGGTCCTGGAGAGGGTGTTTGTGCCTTGTGGGACCCCCGACCTCC
CAGCATTAAAACCCTGCTTCTTTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr7 (8159250-8159937)
               

               
               1-684, gnl|Hg17|chr19 (13734426-13735104)
               

               
               1-684, gnl|Mm7|chr8 (82841288-82840686)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr7 (8159250-8159937)
               

               
               1-684, gnl|Hg17|chr19 (13734426-13735104)
               

               
               1-684, gnl|Mm7|chr8 (82841288-82840686)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               cag (0.151194)

	1-684, gnl\|bosTau2\|chr7 (8159250-8159937)
	1-684, gnl\|Hg17\|chr19 (13734426-13735104)
	1-684, gnl\|Mm7\|chr8 (82841288-82840686)