Non-Coding RNA Search

Ss1.1-Pig2-7J17.5

Sequence:


               
               GGACTGGTGGTGGGCCTCGCTTCACGGCCAGGAGGGCTACGTGCCCCGTAACTACTTTGG
GCTCTTTCCCAGGGTGAAGCCTCAGAGGAATAAAGTCTAGCTGGAGAGGACATTTCCAAA
GGACGGGGAGGAAAGCAGCACTGCCTTCTCGCTGCACCTCCTCCTCCTCCCTTACTGCTG
CATCTCGCTCTGCCCCAGGCCCTTGCAGGGTGGGGTCCTTGCCAACAGCTCTCTGCTTCC
CTGGAAGCCCTGGGGAGAAGGAGAAGCCCAGCCTTAAGTTTAGAAACCTGCCTTAGCTGT
GGGAGGTCGAGGTGGGGCGGGGAATCTTTGGGGGCCAGAGAGACCCCCCCCTCCATCTGC
CAAATCAGATCCCGTCCAAAGTGCCTCCTACTCTCACTGCCAACTTACCCCACCCCCATC
CTGCGCCCCCCAAAACAGACAACCTCCCATCCCAGGGGACCCTGGGGTGGGTCACCTCCA
CCCCCATCTCTACCAGCAGCGGTCAGGGCCCAGGTGAGGCATAGCCACCTCTGCCAGCCT
CCTTGCCCCACCTAGTCAGGTGACTTCACACATCGCTGGTTTTATAACCAAATAGGGAAG
TTTTTCTTTATAAATAAAGGTAGTTTGCCCAGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTGGTGGTGGGCCTCGCTTCACGGCCAGGAGGGCTACGTGCCCCGTAACTACTTTGG
GCTCTTTCCCAGGGTGAAGCCTCAGAGGAATAAAGTCTAGCTGGAGAGGACATTTCCAAA
GGACGGGGAGGAAAGCAGCACTGCCTTCTCGCTGCACCTCCTCCTCCTCCCTTACTGCTG
CATCTCGCTCTGCCCCAGGCCCTTGCAGGGTGGGGTCCTTGCCAACAGCTCTCTGCTTCC
CTGGAAGCCCTGGGGAGAAGGAGAAGCCCAGCCTTAAGTTTAGAAACCTGCCTTAGCTGT
GGGAGGTCGAGGTGGGGCGGGGAATCTTTGGGGGCCAGAGAGACCCCCCCCTCCATCTGC
CAAATCAGATCCCGTCCAAAGTGCCTCCTACTCTCACTGCCAACTTACCCCACCCCCATC
CTGCGCCCCCCAAAACAGACAACCTCCCATCCCAGGGGACCCTGGGGTGGGTCACCTCCA
CCCCCATCTCTACCAGCAGCGGTCAGGGCCCAGGTGAGGCATAGCCACCTCTGCCAGCCT
CCTTGCCCCACCTAGTCAGGTGACTTCACACATCGCTGGTTTTATAACCAAATAGGGAAG
TTTTTCTTTATAAATAAAGGTAGTTTGCCCAGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               294-481, - strand, RNAz p=0.905885

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               294-481, - strand, RNAz p=0.905885

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-635, gnl|bosTau2|chr18 (38493796-38494389)
               

               
               61-635, gnl|Hg17|chr19 (50575327-50574736)
               

               
               61-635, gnl|Mm7|chr7 (17060340-17060910)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-635, gnl|bosTau2|chr18 (38493796-38494389)
               

               
               61-635, gnl|Hg17|chr19 (50575327-50574736)
               

               
               61-635, gnl|Mm7|chr7 (17060340-17060910)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               csp (0.161186)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               ecc (0.115035)

	61-635, gnl\|bosTau2\|chr18 (38493796-38494389)
	61-635, gnl\|Hg17\|chr19 (50575327-50574736)
	61-635, gnl\|Mm7\|chr7 (17060340-17060910)