Non-Coding RNA Search

Ss1.1-Pig2-80E14.5

Sequence:


               
               TGAAGAAAGCCAGGAGTGCCACCAATCTAAGGATTGTGGAAAAAGTGAGGCAGAGACAAG
CACTGAACTAAAAGAAAGGGGAACAAAGCTCTCTGAGAGAACAGTAGGAGAGGAGACAGG
TATCAACATTGGGCCCAATAGCATAGAGGGTTCTAATTTGAACCATGAGAACAGATATAT
GTGGGAGGGAGAAGTAGAACAGCCCAACTTGCAAATGACTGACAAAAAGGCTAAGCAGTC
CAAGAAGTTGATAACAGGAAGTAAAACTCACAATAAAGTAGTGACTGAATCAAGTGCACA
GGCTTTCTCTTCCACAAAGGCAAAAATAGACTCATTTCCGTCAGAAGCTAGGTCTTTACT
CCAGAACCCACAAGATACACCTGTGAAAATTTCTGCCCCAGAATTGCTTCTTCCTTCCCT
AGCCAGATCAGATATGTGTTTGACAGATAGTGAACAGGAGCAAGAAGTATCAACTGGTAG
TGAGGAGTGGCTAGGAAGTTCAGTTCCAGAATCAGCTTCTAGAACTTCTAGGTACAGAAG
CCTCAAACTCAAGAGAGAAAGATCAAAAGATTTTCAGGGTAAAATGATCTATGAACTGAC
TGTTTGGGATGAGAAGAATAAGAAGCCAGAGACCTGGAAGAGCCCAGAGAAACCAAAAAC
AGAAGCCCTGAAGCCTCGAGATGTCCATCCAGAACTGACAGTGACCATAGAAAGCAAGGC
CTTAGAAAACTTCGAAGTTACAGACTTAAAAGTAGAAGAGCTTGCTGCCCTGGGGAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGAAAGCCAGGAGTGCCACCAATCTAAGGATTGTGGAAAAAGTGAGGCAGAGACAAG
CACTGAACTAAAAGAAAGGGGAACAAAGCTCTCTGAGAGAACAGTAGGAGAGGAGACAGG
TATCAACATTGGGCCCAATAGCATAGAGGGTTCTAATTTGAACCATGAGAACAGATATAT
GTGGGAGGGAGAAGTAGAACAGCCCAACTTGCAAATGACTGACAAAAAGGCTAAGCAGTC
CAAGAAGTTGATAACAGGAAGTAAAACTCACAATAAAGTAGTGACTGAATCAAGTGCACA
GGCTTTCTCTTCCACAAAGGCAAAAATAGACTCATTTCCGTCAGAAGCTAGGTCTTTACT
CCAGAACCCACAAGATACACCTGTGAAAATTTCTGCCCCAGAATTGCTTCTTCCTTCCCT
AGCCAGATCAGATATGTGTTTGACAGATAGTGAACAGGAGCAAGAAGTATCAACTGGTAG
TGAGGAGTGGCTAGGAAGTTCAGTTCCAGAATCAGCTTCTAGAACTTCTAGGTACAGAAG
CCTCAAACTCAAGAGAGAAAGATCAAAAGATTTTCAGGGTAAAATGATCTATGAACTGAC
TGTTTGGGATGAGAAGAATAAGAAGCCAGAGACCTGGAAGAGCCCAGAGAAACCAAAAAC
AGAAGCCCTGAAGCCTCGAGATGTCCATCCAGAACTGACAGTGACCATAGAAAGCAAGGC
CTTAGAAAACTTCGAAGTTACAGACTTAAAAGTAGAAGAGCTTGCTGCCCTGGGGAACCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               521-640, - strand, RNAz p=0.77175

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               521-640, - strand, RNAz p=0.77175

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-780, gnl|bosTau2|chr23 (17198184-17197419)
               

               
               6-780, gnl|Hg17|chr6 (43414441-43413664)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-780, gnl|bosTau2|chr23 (17198184-17197419)
               

               
               6-780, gnl|Hg17|chr6 (43414441-43413664)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	6-780, gnl\|bosTau2\|chr23 (17198184-17197419)
	6-780, gnl\|Hg17\|chr6 (43414441-43413664)