Non-Coding RNA Search

Ss1.1-Pig2-80G17.5.5

Sequence:


               
               TATCCAGAAAGTTGCCAACTGTAAATGAGTAGAGCAGGAAGAATGAACTCTACGGACCTC
TAACGTGTCGCGTCAGTCAACATGTGACCCTCACTTAGCTTTTAACTGCCTCTTGCTCAT
CCCCAGATTTATGCTACAGTGTGTTCTTAACAGCCTTTTCTTTTTAAGAGGAGGGTACAG
ACCCTGTGCTATGTATAAATGGAATGGCTAGAACGATCTCGCAGTGACCCTCTAACACAG
GAATTTTCCACAAATTTAAGTGCCTCCCCTTAGGACTTCTTGACTTGCAGCTGTCTTTTT
AGTGGTGTCTCACTGAAGGAGGTATTAGCGTGTGTGTTCTGTTCGGAGCTTGTTGCTGTG
CGTTGTCCACCCCGGTTACAGTTTCGTCGAGGCCAGACGAGATTGCACGGTTCACCTGCC
ATATTCTCTCCAGGAGTGGGGTCCCCGTGACTGTCAGTCCTCTACCTCAGAGCCCTGGGT
TGTTTGTGACCGCCCTGTTCAGCGTCTCACTCTTCTCCCTGAATGGGGTCCCTGCGCGGA
ACTCGGCCTGCATGTGGGTTCCCCACCCCTCCCCATTCGTATCTCCCACCTTGTAGGGAA
CAGTGTGCTCATCTTGTCCGCAGGCGTGAAGTGGAAGAAGAGCCTTGGAGAGCCTTGATC
TCCATCCAGCTTTTGGGTTTTTTTTTTTTTTTTTTTAATCTGGAGAAAAAACTCCATTGA
CCTATATAATGCTTAGGTGTGAGAGGCAGACTAAGCCCCACCCCCCAGGCGATGGTGACA
TGAGCAGGTAAATGCACCGGTTCGGTGACAGCCCCCCTTGGAGCTTGCAGGTTGAGACCG
TGATGGAGCTTCTGAAACAAGCTTTCTTCCAGGACCTAGGGTTGCTTCCCTCAGGACCAG
CCCCGGGAGAACCGGGCCCAAGGCTGGCAAACCCAGCCCTTGCAGATCTGAAGCACCAGA
GCTCCCCAGCCTGTGCTGTGGAGGGGAGGGAGCAGAGGGGAAACAGCTTTCTGAAGGGGT
TTGGAAGCCACATTCCCCTTTTTTGTGCAAGTAATTTAGAGAAGAGCTGATTATTTGACA
AGATAAAAACTAAACACTTGTTACATTTCCAGAAGTTATCATAGATGCCTTAAAGACTTT
CTTTGGAAGATCATTGCCTGTACAGTTACTTTTTGTGTGTGGCATAAATAATGCAGTAAC
CTGTTACAACTGACAACGTTGGTTTTCTGTAGCTAAGGAGTCTTGAGTTGGCAGCCTGCT
CGACTTAATGGCTCAATGTCCTTTTTGGCAGATGTGTGGAGCTGGCTGTTACCATGACAA
CCTGTGTGCTATACCAAGGGGAGGGGCTGGGCAGAAACAGCAGGCACACATTCGGGTTGA
TCACCTTGGCTTCCAAGCCATCCGGGTGGCGCTCGGTGTGGGGCAAGGGCATCTTAAGAG
GACCATGGCGCGTATCAGCATCGTTTCTTTGGAGTCTGTGTAATGGAATGTATTTTTCAA
ATACTGATATTTGCATTTTCTGTAACAATTCCTTATAAATAAAATGAGGTAAAATTGTGC
ATTTAAATTGGAAATCTTAATAACACATTTGTAGTTCTTTTTAATGCAAAAAGTACCAAT
AAGCATTAAAAACAAACAAACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCCAGAAAGTTGCCAACTGTAAATGAGTAGAGCAGGAAGAATGAACTCTACGGACCTC
TAACGTGTCGCGTCAGTCAACATGTGACCCTCACTTAGCTTTTAACTGCCTCTTGCTCAT
CCCCAGATTTATGCTACAGTGTGTTCTTAACAGCCTTTTCTTTTTAAGAGGAGGGTACAG
ACCCTGTGCTATGTATAAATGGAATGGCTAGAACGATCTCGCAGTGACCCTCTAACACAG
GAATTTTCCACAAATTTAAGTGCCTCCCCTTAGGACTTCTTGACTTGCAGCTGTCTTTTT
AGTGGTGTCTCACTGAAGGAGGTATTAGCGTGTGTGTTCTGTTCGGAGCTTGTTGCTGTG
CGTTGTCCACCCCGGTTACAGTTTCGTCGAGGCCAGACGAGATTGCACGGTTCACCTGCC
ATATTCTCTCCAGGAGTGGGGTCCCCGTGACTGTCAGTCCTCTACCTCAGAGCCCTGGGT
TGTTTGTGACCGCCCTGTTCAGCGTCTCACTCTTCTCCCTGAATGGGGTCCCTGCGCGGA
ACTCGGCCTGCATGTGGGTTCCCCACCCCTCCCCATTCGTATCTCCCACCTTGTAGGGAA
CAGTGTGCTCATCTTGTCCGCAGGCGTGAAGTGGAAGAAGAGCCTTGGAGAGCCTTGATC
TCCATCCAGCTTTTGGGTTTTTTTTTTTTTTTTTTTAATCTGGAGAAAAAACTCCATTGA
CCTATATAATGCTTAGGTGTGAGAGGCAGACTAAGCCCCACCCCCCAGGCGATGGTGACA
TGAGCAGGTAAATGCACCGGTTCGGTGACAGCCCCCCTTGGAGCTTGCAGGTTGAGACCG
TGATGGAGCTTCTGAAACAAGCTTTCTTCCAGGACCTAGGGTTGCTTCCCTCAGGACCAG
CCCCGGGAGAACCGGGCCCAAGGCTGGCAAACCCAGCCCTTGCAGATCTGAAGCACCAGA
GCTCCCCAGCCTGTGCTGTGGAGGGGAGGGAGCAGAGGGGAAACAGCTTTCTGAAGGGGT
TTGGAAGCCACATTCCCCTTTTTTGTGCAAGTAATTTAGAGAAGAGCTGATTATTTGACA
AGATAAAAACTAAACACTTGTTACATTTCCAGAAGTTATCATAGATGCCTTAAAGACTTT
CTTTGGAAGATCATTGCCTGTACAGTTACTTTTTGTGTGTGGCATAAATAATGCAGTAAC
CTGTTACAACTGACAACGTTGGTTTTCTGTAGCTAAGGAGTCTTGAGTTGGCAGCCTGCT
CGACTTAATGGCTCAATGTCCTTTTTGGCAGATGTGTGGAGCTGGCTGTTACCATGACAA
CCTGTGTGCTATACCAAGGGGAGGGGCTGGGCAGAAACAGCAGGCACACATTCGGGTTGA
TCACCTTGGCTTCCAAGCCATCCGGGTGGCGCTCGGTGTGGGGCAAGGGCATCTTAAGAG
GACCATGGCGCGTATCAGCATCGTTTCTTTGGAGTCTGTGTAATGGAATGTATTTTTCAA
ATACTGATATTTGCATTTTCTGTAACAATTCCTTATAAATAAAATGAGGTAAAATTGTGC
ATTTAAATTGGAAATCTTAATAACACATTTGTAGTTCTTTTTAATGCAAAAAGTACCAAT
AAGCATTAAAAACAAACAAACTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               844-963, - strand, RNAz p=0.939672

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               844-963, - strand, RNAz p=0.939672

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1641, gnl|bosTau2|chr19 (19291784-19290156)
               

               
               2-1641, gnl|Hg17|chr17 (4015392-4013874)
               

               
               2-1641, gnl|Mm7|chr11 (72851515-72852870)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1641, gnl|bosTau2|chr19 (19291784-19290156)
               

               
               2-1641, gnl|Hg17|chr17 (4015392-4013874)
               

               
               2-1641, gnl|Mm7|chr11 (72851515-72852870)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               fat (0.294855)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               clu (0.239292)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               clu (0.239292)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	2-1641, gnl\|bosTau2\|chr19 (19291784-19290156)
	2-1641, gnl\|Hg17\|chr17 (4015392-4013874)
	2-1641, gnl\|Mm7\|chr11 (72851515-72852870)

	fat (0.294855)
	spl (0.286369)
	che (0.272628)
	clu (0.239292)
	spc (0.226732)
	aor (0.195274)
	sto (0.179824)
	gul (0.177588)
	eye (0.170503)
	fhi (0.169578)
	ski (0.146735)
	lin (0.145603)
	cst (0.140036)
	ste (0.135208)
	pla (0.133672)
	kid (0.129735)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)