Ss1.1-Pig2-80J06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGGGTCAGCAAGGCCGTCCTGGGGCCACGGGCCAGGCCGGGCCTCCAGGTCCTGTGG GACCCCCAGGGCTTCCTGGTCTCCGGGGCGATACTGGGGCCAAGGGAGAGAAGGGTCACC CAGGTCTCATCGGGCTGATCGGCCCCCCTGGGGAGCAGGGAGAGAAGGGCGATCGAGGAC TTCCTGGGCCTCAGGGATCCACTGGACAGAAGGGAGAGACAGGCATCCCAGGAGCATCTG GCCCTATTGGTCCTGGAGGGCCCCCCGGCCTCCCTGGACCTGCTGGCCCCAAAGGAGCCA AAGGAGCCACGGGCCCGGCCGGACCCAAGGGAGAGAAGGGCGTCCAGGGCCCTCCAGGCC ACCCAGGCCCCCCAGGCGAGGTGATCCAGCCCCTGCCCATCCAGATGCCCAAGAAGACGC GGCGCTCAGTGGACGGCAGCCATCTGATGCAGGAAGATGAGGCCATGCCGACTGGGGGTG CCCCGGGCAGTCCCGGGGGGCTGGAGGAGATCTTTGGCTCACTGGACTCCCTTCGGGAGG AGATTGAGCAGATGAGGCGGCCCACGGGGACCCAGGACAGCCCAGCTCGCACCTGCCAGG ACCTGAAGCTCTGCCATCCAGAGCTCCCTGACGGAGAGTACTGGGTGGACCCCAACCAGG GCTGTGCCCGCGATGCCTTCCGGGTTTTCTGCAACTTTACTGCAGGAGGGGAAACCTGTG TGACGCCCAGGGATGACGTCACGCAGTTCTCCTACGTGGACTCCGAAGGCTCCCCGGTGG GTGTGGTCCAGCTCACCTTCCTGCGGCTGCTCAGCGTCTCTGCCCACCAGGACGTGTCCT ACCCGTGCTCCTCCGGGGAGGACCAGGATGGCCCCCTGAAGCTCCGGGGGGCCAACGAGG ATGAGCTGAGTCCAGAGACCAGCCCCTATGTCAAGGAATTCAGGGACGGCTGTCAGACAC AGCAAGGCCGGACGGTGCTAGAAGTTCGAACACCTGTGCTGGAGCAGCTGCCAGTGCTGG ACGCCTCCTTCTCAGACCTGGGGGCGCCCCCGAGGCGGGGAGGGGTGCTGCTGGGGCCTG TCTGCTTCATGGGCTAGGACCTCCTCCTCTGTCTGACCCTGTCCGTCGAAACCAGGCCCA CCTGGAATCCCACAGCCTCCGCTCTGTGCCACCTCGCAGGAGGGCTCCTCACCACCTAGG GGGCCTTGGGCCAGGGCACCGAGGGCCCCCTGGTCAGGGGCAGTCCCGGGGAGGGGTGCA CCGGGGGCTCACTGCCCTCCCACCTGGAGCCTGTGCCCTGTTCGACAGCTGAGACCCTTA TTTAAAAATTTACCTCCCAATCACCCCAAACAAGTGGAAGAGAAGAGAAAGGACACTGTG TATTTTGTATTTAAAAGTAATTATATTAATTATTTAAAGAGTGGAAAACAAAATAACAAA AAAGATAAAGAGAGAGATGCCAACAAAGACCAGCGGACTTTGGAGACAGGGCTCTCCTGG GTGAGCCCCGGCACCCTCATCCTTGCCTCAGGGCCTTCCTCAGTGACGGTGGGGGGTTGG GGGCTGAGCCCCACCTCCCTCGCACCCCACCTGCAGCACCCACTGTGAACGCTGGAATAT ATGGTCTCCTTTGTCTCAGGGCTCTGCCTCTCTCTGCCCAGGGTGGGGCTCTCTCATCTC TACCTACCAGGCGTTTGGCTCCCTGACCCATGTACCTGCTGTCTCTCACTTGGTCAGGGG CTTGCGGCAAGTGCCTGCTCCTTGGGGACCTGGCCACACCCCCAGGGGAGTCATGGAATA GGGAAGGGTGTGTGCAGGGCCTGGGTTCATTCAGAGACTGTTAAAATATTGAAACATTGA CACTCTTCCATAGTAGGTGGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGGGTCAGCAAGGCCGTCCTGGGGCCACGGGCCAGGCCGGGCCTCCAGGTCCTGTGG GACCCCCAGGGCTTCCTGGTCTCCGGGGCGATACTGGGGCCAAGGGAGAGAAGGGTCACC CAGGTCTCATCGGGCTGATCGGCCCCCCTGGGGAGCAGGGAGAGAAGGGCGATCGAGGAC TTCCTGGGCCTCAGGGATCCACTGGACAGAAGGGAGAGACAGGCATCCCAGGAGCATCTG GCCCTATTGGTCCTGGAGGGCCCCCCGGCCTCCCTGGACCTGCTGGCCCCAAAGGAGCCA AAGGAGCCACGGGCCCGGCCGGACCCAAGGGAGAGAAGGGCGTCCAGGGCCCTCCAGGCC ACCCAGGCCCCCCAGGCGAGGTGATCCAGCCCCTGCCCATCCAGATGCCCAAGAAGACGC GGCGCTCAGTGGACGGCAGCCATCTGATGCAGGAAGATGAGGCCATGCCGACTGGGGGTG CCCCGGGCAGTCCCGGGGGGCTGGAGGAGATCTTTGGCTCACTGGACTCCCTTCGGGAGG AGATTGAGCAGATGAGGCGGCCCACGGGGACCCAGGACAGCCCAGCTCGCACCTGCCAGG ACCTGAAGCTCTGCCATCCAGAGCTCCCTGACGGAGAGTACTGGGTGGACCCCAACCAGG GCTGTGCCCGCGATGCCTTCCGGGTTTTCTGCAACTTTACTGCAGGAGGGGAAACCTGTG TGACGCCCAGGGATGACGTCACGCAGTTCTCCTACGTGGACTCCGAAGGCTCCCCGGTGG GTGTGGTCCAGCTCACCTTCCTGCGGCTGCTCAGCGTCTCTGCCCACCAGGACGTGTCCT ACCCGTGCTCCTCCGGGGAGGACCAGGATGGCCCCCTGAAGCTCCGGGGGGCCAACGAGG ATGAGCTGAGTCCAGAGACCAGCCCCTATGTCAAGGAATTCAGGGACGGCTGTCAGACAC AGCAAGGCCGGACGGTGCTAGAAGTTCGAACACCTGTGCTGGAGCAGCTGCCAGTGCTGG ACGCCTCCTTCTCAGACCTGGGGGCGCCCCCGAGGCGGGGAGGGGTGCTGCTGGGGCCTG TCTGCTTCATGGGCTAGGACCTCCTCCTCTGTCTGACCCTGTCCGTCGAAACCAGGCCCA CCTGGAATCCCACAGCCTCCGCTCTGTGCCACCTCGCAGGAGGGCTCCTCACCACCTAGG GGGCCTTGGGCCAGGGCACCGAGGGCCCCCTGGTCAGGGGCAGTCCCGGGGAGGGGTGCA CCGGGGGCTCACTGCCCTCCCACCTGGAGCCTGTGCCCTGTTCGACAGCTGAGACCCTTA TTTAAAAATTTACCTCCCAATCACCCCAAACAAGTGGAAGAGAAGAGAAAGGACACTGTG TATTTTGTATTTAAAAGTAATTATATTAATTATTTAAAGAGTGGAAAACAAAATAACAAA AAAGATAAAGAGAGAGATGCCAACAAAGACCAGCGGACTTTGGAGACAGGGCTCTCCTGG GTGAGCCCCGGCACCCTCATCCTTGCCTCAGGGCCTTCCTCAGTGACGGTGGGGGGTTGG GGGCTGAGCCCCACCTCCCTCGCACCCCACCTGCAGCACCCACTGTGAACGCTGGAATAT ATGGTCTCCTTTGTCTCAGGGCTCTGCCTCTCTCTGCCCAGGGTGGGGCTCTCTCATCTC TACCTACCAGGCGTTTGGCTCCCTGACCCATGTACCTGCTGTCTCTCACTTGGTCAGGGG CTTGCGGCAAGTGCCTGCTCCTTGGGGACCTGGCCACACCCCCAGGGGAGTCATGGAATA GGGAAGGGTGTGTGCAGGGCCTGGGTTCATTCAGAGACTGTTAAAATATTGAAACATTGA CACTCTTCCATAGTAGGTGGGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1114-1229, - strand, RNAz p=0.559528 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1114-1229, - strand, RNAz p=0.559528 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 112-220, gnl|bosTau2|chr23 (5591359-5591467) | |
| 112-220, gnl|canFam2|chr12 (5634510-5634635) | |
| 112-220, gnl|canFam2|chr12 (5634624-5634515) | |
| 112-220, gnl|danRer3|chr24 (26761647-26761771) | |
| 112-220, gnl|echTel1|scaffold_213722 (4866-4975) | |
| 112-220, gnl|hg17|chr12 (106702527-106702651) | |
| 112-220, gnl|hg17|chr2 (130759702-130759813) | |
| 112-220, gnl|Hg17|chr6 (33242584-33242476) | |
| 112-220, gnl|loxAfr1|scaffold_20920 (4279-4170) | |
| 112-220, gnl|mm7|chr17 (32142341-32142215) | |
| 112-220, gnl|mm7|chr17 (32142227-32142336) | |
| 112-220, gnl|Mm7|chr17 (32142233-32142341) | |
| 112-220, gnl|monDom2|scaffold_42 (15304184-15304294) | |
| 112-220, gnl|oryCun1|scaffold_195565 (639-534) | |
| 112-220, gnl|panTro1|chr13 (16917052-16916924) | |
| 112-220, gnl|panTro1|chr13 (16916936-16917048) | |
| 112-220, gnl|rheMac2|chr11 (108862283-108862407) | |
| 112-220, gnl|rheMac2|chr4 (32882346-32882237) | |
| 112-220, gnl|rn3|chr20 (4928274-4928400) | |
| 112-220, gnl|rn3|chr20 (4928388-4928279) | |
| 112-220, gnl|tetNig1|chrUn_random (10547601-10547703) | |
| 344-634, gnl|bosTau2|chr11 (86744139-86743860) | |
| 344-634, gnl|Hg17|chr9 (134942366-134942647) | |
| 344-634, gnl|Mm7|chr2 (28031892-28032172) | |
| 721-849, gnl|bosTau2|chr11 (86733726-86733598) | |
| 721-849, gnl|canFam2|chr20 (54077089-54076829) | |
| 721-849, gnl|danRer3|chr19 (2004503-2004747) | |
| 721-849, gnl|dasNov1|scaffold_109669 (928-1189) | |
| 721-849, gnl|echTel1|scaffold_235269 (3435-3195) | |
| 721-849, gnl|fr1|chrUn (183220679-183220922) | |
| 721-849, gnl|galGal2|chr17 (2867692-2867947) | |
| 721-849, gnl|hg17|chr19 (9932308-9932569) | |
| 721-849, gnl|Hg17|chr9 (134952735-134952864) | |
| 721-849, gnl|loxAfr1|scaffold_44595 (9667-9930) | |
| 721-849, gnl|Mm7|chr2 (28039875-28040004) | |
| 721-849, gnl|mm7|chr9 (20640843-20641105) | |
| 721-849, gnl|monDom2|scaffold_106 (1568081-1568343) | |
| 721-849, gnl|oryCun1|scaffold_204641 (61345-61084) | |
| 721-849, gnl|panTro1|chr20 (10296816-10297073) | |
| 721-849, gnl|rheMac2|chr19 (9762408-9762669) | |
| 721-849, gnl|rn3|chr8 (19790058-19790320) | |
| 721-849, gnl|tetNig1|chr18 (8737827-8738083) | |
| 721-849, gnl|xenTro1|scaffold_56 (2495563-2495323) | |
| 955-1852, gnl|bosTau2|chr23 (5595017-5595905) | |
| 955-1852, gnl|Hg17|chr6 (33239575-33238655) | |
| 955-1852, gnl|Mm7|chr17 (32144791-32145639) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 112-220, gnl|bosTau2|chr23 (5591359-5591467) | |
| 112-220, gnl|canFam2|chr12 (5634510-5634635) | |
| 112-220, gnl|canFam2|chr12 (5634624-5634515) | |
| 112-220, gnl|danRer3|chr24 (26761647-26761771) | |
| 112-220, gnl|echTel1|scaffold_213722 (4866-4975) | |
| 112-220, gnl|hg17|chr12 (106702527-106702651) | |
| 112-220, gnl|hg17|chr2 (130759702-130759813) | |
| 112-220, gnl|Hg17|chr6 (33242584-33242476) | |
| 112-220, gnl|loxAfr1|scaffold_20920 (4279-4170) | |
| 112-220, gnl|mm7|chr17 (32142341-32142215) | |
| 112-220, gnl|mm7|chr17 (32142227-32142336) | |
| 112-220, gnl|Mm7|chr17 (32142233-32142341) | |
| 112-220, gnl|monDom2|scaffold_42 (15304184-15304294) | |
| 112-220, gnl|oryCun1|scaffold_195565 (639-534) | |
| 112-220, gnl|panTro1|chr13 (16917052-16916924) | |
| 112-220, gnl|panTro1|chr13 (16916936-16917048) | |
| 112-220, gnl|rheMac2|chr11 (108862283-108862407) | |
| 112-220, gnl|rheMac2|chr4 (32882346-32882237) | |
| 112-220, gnl|rn3|chr20 (4928274-4928400) | |
| 112-220, gnl|rn3|chr20 (4928388-4928279) | |
| 112-220, gnl|tetNig1|chrUn_random (10547601-10547703) | |
| 344-634, gnl|bosTau2|chr11 (86744139-86743860) | |
| 344-634, gnl|Hg17|chr9 (134942366-134942647) | |
| 344-634, gnl|Mm7|chr2 (28031892-28032172) | |
| 721-849, gnl|bosTau2|chr11 (86733726-86733598) | |
| 721-849, gnl|canFam2|chr20 (54077089-54076829) | |
| 721-849, gnl|danRer3|chr19 (2004503-2004747) | |
| 721-849, gnl|dasNov1|scaffold_109669 (928-1189) | |
| 721-849, gnl|echTel1|scaffold_235269 (3435-3195) | |
| 721-849, gnl|fr1|chrUn (183220679-183220922) | |
| 721-849, gnl|galGal2|chr17 (2867692-2867947) | |
| 721-849, gnl|hg17|chr19 (9932308-9932569) | |
| 721-849, gnl|Hg17|chr9 (134952735-134952864) | |
| 721-849, gnl|loxAfr1|scaffold_44595 (9667-9930) | |
| 721-849, gnl|Mm7|chr2 (28039875-28040004) | |
| 721-849, gnl|mm7|chr9 (20640843-20641105) | |
| 721-849, gnl|monDom2|scaffold_106 (1568081-1568343) | |
| 721-849, gnl|oryCun1|scaffold_204641 (61345-61084) | |
| 721-849, gnl|panTro1|chr20 (10296816-10297073) | |
| 721-849, gnl|rheMac2|chr19 (9762408-9762669) | |
| 721-849, gnl|rn3|chr8 (19790058-19790320) | |
| 721-849, gnl|tetNig1|chr18 (8737827-8738083) | |
| 721-849, gnl|xenTro1|scaffold_56 (2495563-2495323) | |
| 955-1852, gnl|bosTau2|chr23 (5595017-5595905) | |
| 955-1852, gnl|Hg17|chr6 (33239575-33238655) | |
| 955-1852, gnl|Mm7|chr17 (32144791-32145639) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (2.05311) | |
| nmm (0.265604) | |
| hyp (0.142837) |